Danner, C., Machado Mello De Sousa, T., Mach, R. L., & Mach-Aigner, A. R. (2025). The Impact of DNA Methylation in Trichoderma reesei on Cellulase Production and Strain Degeneration. Microorganisms, 13(3), Article 584. https://doi.org/10.3390/microorganisms13030584 ( reposiTUm)

Danner, C., Karpenko, Y., Mach, R. L., & Mach-Aigner, A. R. (2025). Act1 out of Action: Identifying Reliable Reference Genes in Trichoderma reesei for Gene Expression Analysis. Journal of Fungi, 11(5), Article 396. https://doi.org/10.3390/jof11050396 ( reposiTUm)

Dera, K. M., Barro, D. T., Kaboré, B. A., Gstöttenmayer, F., Dieng, M. M., Pagabeleguem, S., Weiss, B., Fiorenza, G., Piccinno, R., Malacrida, A. R., Aksoy, S., de Beer, C. J., Mach, R. L., Vreysen, M. J. B., & Abd‐Alla, A. M. M. (2025). Spiroplasma infection in colonized Glossina fuscipes fuscipes: impact on mass rearing and the sterile insect technique. Insect Science. https://doi.org/10.1111/1744-7917.70078 ( reposiTUm)

Charest, J., Loebenstein, P., Mach, R. L., & Mach-Aigner, A. R. (2025). FunFEA: an R package for fungal functional enrichment analysis. BMC Bioinformatics, 26, Article 138. https://doi.org/10.1186/s12859-025-06164-7 ( reposiTUm)

Steinbacher, S., Priselac, K., Kandler, W., Savio, D., Vierheilig, J., Mayer, R., Demeter, K., Linke, R. B., Mach, R. L., Sommer, R., Lindner, G., Zuser, K., Kolm, C., Stevenson, M. E., Blaschke, A. P., Kirschner, A. K. T., Leifels, M., & Farnleitner, A. H. (2025). Seasonally recurring patterns of dominant Crenothrix spp. in a European alluvial drinking water well: Significance and potential indicator role. Water Research, 279, Article 123406. https://doi.org/10.1016/j.watres.2025.123406 ( reposiTUm)

Burger, I., Schmal, M., Peikert, K., Fourtis, L., Suster, C., Stanetty, C., Schnalzer, D., Hufnagel, B., Böttcher, T., Birner-Gruenberger, R., Mach, R. L., Mach-Aigner, A. R., Schittmayer-Schantl, M., & Zimmermann, C. (2025). Discovery of the antifungal compound ilicicolin K through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 18(1), Article 32. https://doi.org/10.1186/s13068-025-02628-3 ( reposiTUm)

Jadhav, R., Mach, R. L., & Mach-Aigner, A. R. (2024). Protein secretion and associated stress in industrially employed filamentous fungi. Applied Microbiology and Biotechnology, 108, Article 92. https://doi.org/10.1007/s00253-023-12985-4 ( reposiTUm)

Masi, A. L., Stark, G., Pfnier, J., Mach, R., & Mach-Aigner, A. (2024). Exploration of Trichoderma reesei as an alternative host for erythritol production. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 17, Article 90. https://doi.org/10.1186/s13068-024-02537-x ( reposiTUm)

Besleaga, M., Zimmermann, C., Ebner, K., Mach, R., Mach-Aigner, A., Geier, M., Glieder, A., Spadiut, O., & Kopp, J. (2024). Bi-directionalized promoter systems allow methanol-free production of hard-to-express peroxygenases with Komagataella Phaffii. Microbial Cell Factories, 23, Article 177. https://doi.org/10.1186/s12934-024-02451-9 ( reposiTUm)

Fritsche, S., Fronek, F., Mach, R., & Steiger, M. G. (2024). Applicability of non-invasive and live-cell holotomographic imaging on fungi. Journal of Microbiological Methods, 224, Article 106983. https://doi.org/10.1016/j.mimet.2024.106983 ( reposiTUm)

Daza Serna, L. V., Toussaint, V., Mach-Aigner, A., Mach, R., Kessler, P., Bachmann, S., Pöppler, A.-C., Friedl, A., & Delidovich, I. (2024). Assessment of the Recovery of Erythritol Using Boronic Acid Polymers. Industrial & Engineering Chemistry Research, 63(47), 20677–20687. https://doi.org/10.1021/acs.iecr.4c01224 ( reposiTUm)

Daza-Prieto, B., Raicevic, N., Martinovic, A., Ladstätter, J., Zuber Bogdanovic, I., Anika Schorpp, Stoeger, A., Mach, R., Ruppitsch, W., & Cabal, A. (2024). Genetic diversity and distinction of Enterococcus faecium and Enterococcus lactis in traditional Montenegrin brine cheeses and salamis. Frontiers in Microbiology, 15, Article 1473938. https://doi.org/10.3389/fmicb.2024.1473938 ( reposiTUm)

Daza Prieto, B., Raicevic, N., Hyden, P., Mösenbacher, T., Ladstätter, J., Stöger, A., Cabal, A., Mach, R. L., Martinovic, A., & Ruppitsch, W. (2024). Complete genome of Microbacterium plantarum CoE-159-22, isolated from traditionally produced Montenegrin cheese. Microbiology Resource Announcements, Article e0003524. https://doi.org/10.1128/mra.00035-24 ( reposiTUm)

Dera, K. M., Pagabeleguem, S., Melachio Tanekou, T. T., Toé, A. I., Ouedraogo/Sanou, G. M. S., Belem, A. M. G., Ravel, S., Mach, R., Vreysen, M. J. B., & Abd-Alla, A. M. M. (2024). Impact of long-term mass-rearing on the genetic structure of tsetse fly Glossina palpalis gambiensis colonies. Insect Science. https://doi.org/10.1111/1744-7917.13479 ( reposiTUm)

Kaboré, B. A., Taqi, S. D., Mkinga, A., Morales Zambrana, A. E., Mach, R., Vreysen, M., & de Beer, C. J. (2024). Radiation dose fractionation and its potential hormetic effects on male Glossina palpalis gambiensis (Diptera: Glossinidae): a comparative study of reproductive and flight quality parameters. Parasite, 31, Article 4. https://doi.org/10.1051/parasite/2024001 ( reposiTUm)

Daza-Prieto, B., Raicevic, N., Cabal, A., Hyden, P., Mösenbacher, T., Ladstätter, J., Richter, S., Stöger, A., Joao Cardoso, M., Chakeri, A., Hasenberger, P., Stadlbauer, S., Mach, R. L., Martinovic, A., & Ruppitsch, W. (2024). Enterococcus montenegrensis sp. nov., isolated from artisanal Montenegrin dry sausage. International Journal of Systematic and Evolutionary Microbiology, 74(1). https://doi.org/10.1099/ijsem.0.006206 ( reposiTUm)

Masi, A., Wögerbauer, K., Mach, R. L., & Mach-Aigner, A. R. (2024). Genomic deletions in Aureobasidium pullulans by an AMA1 plasmid for gRNA and CRISPR/Cas9 expression. Fungal Biology and Biotechnology, 11, Article 6. https://doi.org/10.1186/s40694-024-00175-4 ( reposiTUm)

Besleaga, M., Vignolle, G. A., Kopp, J., Spadiut, O., Mach, R. L., Mach-Aigner, A. R., & Zimmermann, C. (2023). Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris). Fungal Biology and Biotechnology, 10, Article 7. https://doi.org/10.1186/s40694-023-00154-1 ( reposiTUm)

Daza-Serna, L., Masi, A., Serna-Loaiza, S., Pfnier, J., Stark, G., Mach, R. L., Mach-Aigner, A. R., & Friedl, A. (2023). Detoxification strategy of wheat straw hemicellulosic hydrolysate for cultivating Trichoderma reesei: a contribution towards the wheat straw biorefinery. Biomass Conversion and Biorefinery, 13(18), 16495–16509. https://doi.org/10.1007/s13399-023-04099-8 ( reposiTUm)

Danner, C., Mach, R., & Mach-Aigner, A. R. (2023). The phenomenon of strain degeneration in biotechnologically relevant fungi. Applied Microbiology and Biotechnology, 107, 4745–4758. https://doi.org/10.1007/s00253-023-12615-z ( reposiTUm)

Knezevic, K., Daza Serna, L. V., Mach-Aigner, A., Mach, R., Friedl, A., Krampe, J., & Kreuzinger, N. (2023). Investigation of ion-exchange membranes and erythritol concentration for the desalination of erythritol culture broth by electrodialysis. Chemical Engineering and Processing: Process Intensification, 192, Article 109494. https://doi.org/10.1016/j.cep.2023.109494 ( reposiTUm)

Dera, K.-S. M., Dieng, M. M., Moyaba, P., Ouedraogo, G. M., Pagabeleguem, S., Njokou, F., Ngambia Freitas, F. S., de Beer, C. J., Mach, R. L., Vreysen, M., & Abd-Alla, A. M. (2023). Prevalence of Spiroplasma and interaction with wild Glossina tachinoides microbiota. Parasite, 30, Article 62. https://doi.org/10.1051/parasite/2023064 ( reposiTUm)

Gstöttenmayer, F., Moyaba, P., Rodriguez, M., Mulandane, F. C., Mucache, H. N., Neves, L., de Beer, C. J., Ravel, S., De Meeûs, T., Mach, R. L., Vreysen, M. J. B., & Abd-Alla, A. M. M. (2023). Development and characterization of microsatellite markers for the tsetse species Glossina brevipalpis and preliminary population genetics analyses. Parasite, 30, Article 34. https://doi.org/10.1051/parasite/2023038 ( reposiTUm)

Kaboré, B. A., Nawaj, A., Maiga, H., Soukia, O., Pagabeleguem, S., Ouédraogo/Sanon, M. S. G., Vreysen, M. J. B., Mach, R. L., & de Beer, C. J. (2023). X-rays are as effective as gamma-rays for the sterilization of Glossina palpalis gambiensis Vanderplank, 1911 (Diptera: Glossinidae) for use in the sterile insect technique. Scientific Reports, 13(1), Article 17633. https://doi.org/10.1038/s41598-023-44479-8 ( reposiTUm)

Yamada, H., Kaboré, B. A., Bimbilé Somda, N. S., Ntoyi, N. L., de Beer, C. J., Bouyer, J., Caceres, C., Mach, R. L., & GOMEZ-SIMUTA, Y. (2023). Suitability of Raycell MK2 Blood X-ray Irradiator for the Use in the Sterile Insect Technique: Dose Response in Fruit Flies, Tsetse Flies and Mosquitoes. Insects, 14(1), 92. https://doi.org/10.3390/insects14010092 ( reposiTUm)

Kreuter, J., Stark, G., Mach, R. L., Mach-Aigner, A. R., & Zimmermann, C. (2022). Fast and efficient CRISPR-mediated genome editing in Aureobasidium using Cas9 ribonucleoproteins. Journal of Biotechnology, 350, 11–16. https://doi.org/10.1016/j.jbiotec.2022.03.017 ( reposiTUm)

Machado Mello De Sousa, T., Gorsche, R., Jovanović, B., Mach, R. L., & Mach-Aigner, A. R. (2022). In Vitro Characterization of a Nuclear Receptor-like Domain of the Xylanase Regulator 1 from Trichoderma reesei. Journal of Fungi, 8(12), Article 1254. https://doi.org/10.3390/jof8121254 ( reposiTUm)

Vignolle, G. A., Mach, R., Mach-Aigner, A. R., & Zimmermann, C. (2022). FunOrder 2.0 – a method for the fully automated curation of co-evolved genes in fungal biosynthetic gene clusters. Frontiers in Fungal Biology. https://doi.org/10.3389/ffunb.2022.1020623 ( reposiTUm)

Daza-Serna, L., Knezevic, K., Kreuzinger, N., Mach-Aigner, A., Mach, R., Krampe, J., & Friedl, A. (2022). Recovery of Salts from Synthetic Erythritol Culture Broth via Electrodialysis: An Alternative Strategy from the Bin to the Loop. Sustainability, 14(2), 1–18. https://doi.org/10.3390/su14020734 ( reposiTUm)

Daza-Prieto, B., Raicevic, N., Ladstätter, J., Hyden, P., Jovanovic, A., Stöger, A., Cabal Rosel, A., Mach, R., Ruppitsch, W., & Martinovic, A. (2022). Draft Genome Sequence of Enterococcus dispar CoE-457-22, Isolated from Traditionally Produced Montenegrin Dry Sausage. Microbiology Resource Announcements, Article e0103822. https://doi.org/10.1128/mra.01038-22 ( reposiTUm)

Schmal, M., Girod, C., Yaver, D., Mach, R., & Mach-Aigner, A. (2022). A bioinformatic-assisted workflow for genome-wide identification of ncRNAs. NAR Genomics and Bioinformatics, 4(3), lqac059. https://doi.org/10.1093/nargab/lqac059 ( reposiTUm)

Dieng, M. M., Augustinos, A. A., Demirbas-Uzel, G., Doudoumis, V., Parker, A. G., Tsiamis, G., Mach, R., Bourtzis, K., & ABD-ALLA, A. (2022). Interactions between Glossina pallidipes salivary gland hypertrophy virus and tsetse endosymbionts in wild tsetse populations. Parasites and Vectors, 15, Article 447. https://doi.org/10.1186/s13071-022-05536-9 ( reposiTUm)

Vignolle, G. A., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2021). Genome Sequence of the Black Yeast-Like Strain Aureobasidium pullulans var. aubasidani CBS 100524. Microbiology Resource Announcements, 10(12). https://doi.org/10.1128/mra.01293-20 ( reposiTUm)

Masi, A., Mach, R. L., & Mach-Aigner, A. R. (2021). The pentose phosphate pathway in industrially relevant fungi: crucial insights for bioprocessing. Applied Microbiology and Biotechnology, 105(10), 4017–4031. https://doi.org/10.1007/s00253-021-11314-x ( reposiTUm)

Linke, R. B., Zeki, S., Mayer, R., Keiblinger, K., Savio, D., Kirschner, A. K. T., Reischer, G. H., Mach, R. L., Sommer, R., & Farnleitner, A. H. (2021). Identifying Inorganic Turbidity in Water Samples as Potential Loss Factor During Nucleic Acid Extraction: Implications for Molecular Fecal Pollution Diagnostics and Source Tracking. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.660566 ( reposiTUm)

Tomico Cuenca, I., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2021). An overview on current molecular tools for heterologous gene expression in Trichoderma. Fungal Biology and Biotechnology, 8(11). https://doi.org/10.1186/s40694-021-00119-2 ( reposiTUm)

Primerano, P., Juric, M., Mach, R., Mach-Aigner, A., & Derntl, C. (2021). Expanding the toolbox: another auxotrophic marker for targeted gene integrations in Trichoderma reesei. Fungal Biology and Biotechnology, 8(9). https://doi.org/10.1186/s40694-021-00116-5 ( reposiTUm)

Daza-Serna, L., Serna-Loaiza, S., Masi, A., Mach, R. L., Mach-Aigner, A. R., & Friedl, A. (2021). From the culture broth to the erythritol crystals: an opportunity for circular economy. Applied Microbiology and Biotechnology, 105(11), 4467–4486. https://doi.org/10.1007/s00253-021-11355-2 ( reposiTUm)

Martzy, R., Mello de Sousa, T. M., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2021). The phenomenon of degeneration of industrial Trichoderma reesei strains. Biotechnology for Biofuels, 14(193). https://doi.org/10.1186/s13068-021-02043-4 ( reposiTUm)

Neuendorf, C. S., Vignolle, G. A., Derntl, C., Tomin, T., Novak, K., Mach, R. L., Birner-Grünberger, R., & Pflügl, S. (2021). A quantitative metabolic analysis reveals Acetobacterium woodii as a flexible and robust host for formate-based bioproduction. Metabolic Engineering, 68, 68–85. https://doi.org/10.1016/j.ymben.2021.09.004 ( reposiTUm)

Vignolle, G. A., Schaffer, D., Zehetner, L., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2021). FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution. PLoS Computational Biology, 17(9), e1009372. https://doi.org/10.1371/journal.pcbi.1009372 ( reposiTUm)

Steinbacher, S., Savio, D. F., Demeter, K., Karl, M., Kandler, W., Kirschner, A. K. T., Reischer, G. H., Ixenmaier, S. K., Mayer, R., Mach, R. L. ., Derx, J., Sommer, R., Linke, R. B., & Farnleitner, A. (2021). Genetic microbial faecal source tracking: rising technology to support future water quality testing and safety management. Österreichische Wasser- Und Abfallwirtschaft, 73(11–12), 468–481. https://doi.org/10.1007/s00506-021-00811-y ( reposiTUm)

Kolm, C., Cervenka, I., Aschl, U. J., Baumann, N., Jakwerth, S., Krska, R., Mach, R. L., Sommer, R., DeRosa, M. C., Kirschner, A. K. T., Farnleitner, A. H., & Reischer, G. H. (2020). DNA aptamers against bacterial cells can be efficiently selected by a SELEX process using state‑of‑the art qPCR and ultra‑deep sequencing. Scientific Reports, 10(20917). https://doi.org/10.1038/s41598-020-77221-9 ( reposiTUm)

Frick, C., Vierheilig, J., Nadiotis-Tsaka, T., Ixenmaier, S., Linke, R., Reischer, G. H., Komma, J., Kirschner, A. K. T., Mach, R. L., Savio, D., Seidl, D., Blaschke, A. P., Sommer, R., Derx, J., & Farnleitner, A. H. (2020). Elucidating fecal pollution patterns in alluvial water resources by linking standard fecal indicator bacteria to river connectivity and genetic microbial source tracking. Water Research, 184(116132), 116132. https://doi.org/10.1016/j.watres.2020.116132 ( reposiTUm)

Till, P., Derntl, C., Kiesenhofer, D. P., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2020). Regulation of gene expression by the action of a fungal lncRNA on a transactivator. RNA Biology, 17(1), 47–61. https://doi.org/10.1080/15476286.2019.1663618 ( reposiTUm)

Derntl, C., Mach, R., & Mach-Aigner, A. (2020). Application of the human estrogen receptor within a synthetic transcription factor in Trichoderma reesei. Fungal Biology and Biotechnology, 7(12). https://doi.org/10.1186/s40694-020-00102-3 ( reposiTUm)

V. D. dos Santos, A. C., Heydenreich, R., Derntl, C., Mach-Aigner, A. R., Mach, R. L., Ramer, G., & Lendl, B. (2020). Nanoscale Infrared Spectroscopy and Chemometrics Enable Detection of Intracellular Protein Distribution. Analytical Chemistry, 92(24), 15719–15725. https://doi.org/10.1021/acs.analchem.0c02228 ( reposiTUm)

Till, P., Toepel, J., Bühler, B., Mach, R. L., & Mach-Aigner, A. R. (2020). Regulatory systems for gene expression control in cyanobacteria. Applied Microbiology and Biotechnology, 104(5), 1977–1991. https://doi.org/10.1007/s00253-019-10344-w ( reposiTUm)

Vignolle, G. A., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2020). Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp. BMC Genomics, 21(258). https://doi.org/10.1186/s12864-020-6653-6 ( reposiTUm)

Savio, D., Stadler, P., Reischer, G. H., Demeter, K., Linke, R. B., Blaschke, A. P., Mach, R. L., Kirschner, A. K. T., Stadler, H., & Farnleitner, A. H. (2019). Spring Water of an Alpine Karst Aquifer Is Dominated by a Taxonomically Stable but Discharge-Responsive Bacterial Community. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.00028 ( reposiTUm)

Kolm, C., Martzy, R., Führer, M., Mach, R. L., Krska, R., Baumgartner, S., Farnleitner, A. H., & Reischer, G. H. (2019). Detection of a microbial source tracking marker by isothermal helicase-dependent amplification and a nucleic acid lateral-flow strip test. Scientific Reports, 9(393). https://doi.org/10.1038/s41598-018-36749-7 ( reposiTUm)

Lepuschitz, S., Schill, S., Stoeger, A., Pekard-Amenitsch, S., Huhulescu, S., Inreiter, N., Hartl, R., Kerschner, H., Sorschag, S., Springer, B., Brisse, S., Allerberger, F., Mach, R. L., & Ruppitsch, W. (2019). Whole genome sequencing reveals resemblance between ESBL-producing and carbapenem resistant Klebsiella pneumoniae isolates from Austrian rivers and clinical isolates from hospitals. Science of the Total Environment, 662, 227–235. https://doi.org/10.1016/j.scitotenv.2019.01.179 ( reposiTUm)

Martzy, R., Bica-Schröder, K., Pálvölgyi, Á. M., Kolm, C., Jakwerth, S., Kirschner, A. K. T., Sommer, R., Krska, R., Mach, R. L., Farnleitner, A. H., & Reischer, G. H. (2019). Simple lysis of bacterial cells for DNA-based diagnostics using hydrophilic ionic liquids. Scientific Reports, 9(13994). https://doi.org/10.1038/s41598-019-50246-5 ( reposiTUm)

Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2019). Fusion transcription factors for strong, constitutive expression of cellulases and xylanases in Trichoderma reesei. Biotechnology for Biofuels, 12(231). https://doi.org/10.1186/s13068-019-1575-8 ( reposiTUm)

Martzy, R., Kolm, C., Krska, R., Mach, R. L., Farnleitner, A. H., & Reischer, G. H. (2019). Challenges and perspectives in the application of isothermal DNA amplification methods for food and water analysis. Analytical and Bioanalytical Chemistry, 411, 1695–1702. https://doi.org/10.1007/s00216-018-1553-1 ( reposiTUm)

Lepuschitz, S., Baron, S., Larvor, E., Granier, S. A., Pretzer, C., Mach, R. L., Farnleitner, A. H., Ruppitsch, W., Pleininger, S., Indra, A., & Kirschner, A. K. T. (2019). Phenotypic and Genotypic Antimicrobial Resistance Traits of Vibrio cholerae Non-O1/Non-O139 Isolated From a Large Austrian Lake Frequently Associated With Cases of Human Infection. Frontiers in Microbiology, 10. https://doi.org/10.3389/fmicb.2019.02600 ( reposiTUm)

Mach, R. (2018). Alternative Süßungsmittel. Aktuelle Ernaehrungsmedizin, 43(S 01), S50–S54. https://doi.org/10.1055/a-0660-4579 ( reposiTUm)

Lepuschitz, S., Pekard-Amenitsch, S., Haunold, R., Schill, S., Schriebl, A., Mach, R., Allerberger, F., Ruppitsch, W., & Forsythe, S. J. (2018). Draft Genome Sequence of the First Documented Clinical Siccibacter turicensis Isolate in Austria. Genome Announcements, 6(18). https://doi.org/10.1128/genomea.00380-18 ( reposiTUm)

Till, P., Pucher, M. E., Mach, R. L., & Mach-Aigner, A. R. (2018). A long noncoding RNA promotes cellulase expression in Trichoderma reesei. Biotechnology for Biofuels, 11(78). https://doi.org/10.1186/s13068-018-1081-4 ( reposiTUm)

Regnat, K., Mach, R. L., & Mach-Aigner, A. R. (2018). Erythritol as sweetener-wherefrom and whereto? Applied Microbiology and Biotechnology, 102(2), 587–595. https://doi.org/10.1007/s00253-017-8654-1 ( reposiTUm)

Kiesenhofer, D. P., Mach, R. L., & Mach-Aigner, A. R. (2018). Influence of cis Element Arrangement on Promoter Strength in Trichoderma reesei. Applied and Environmental Microbiology, 84(1). https://doi.org/10.1128/aem.01742-17 ( reposiTUm)

Till, P., Mach, R. L., & Mach-Aigner, A. R. (2018). A current view on long noncoding RNAs in yeast and filamentous fungi. Applied Microbiology and Biotechnology, 102(17), 7319–7331. https://doi.org/10.1007/s00253-018-9187-y ( reposiTUm)

Rassinger, A., Gacek‑Matthews, A., Strauss, J., Mach, R. L., & Mach-Aigner, A. R. (2018). Truncation of the transcriptional repressor protein Cre1 in Trichoderma reesei Rut‑C30 turns it into an activator. Fungal Biology and Biotechnology, 5(15). https://doi.org/10.1186/s40694-018-0059-0 ( reposiTUm)

Mayer, R., Reischer, G., Ixenmaier, S., Derx, J., Blaschke, A. P., Ebdon, J. E., Linke, R., Egle, L., Ahmed, W., Blanch, A. R., Byamukama, D., Savill, M., Mushi, D., Cristóbal, H. A., Edge, T. A., Schade, M. A., Aslan, A., Brooks, Y. M., Sommer, R., … Farnleitner, A. (2018). Global Distribution of Human-Associated Fecal Genetic Markers in Reference Samples from Six Continents. Environmental Science and Technology, 52(9), 5076–5084. https://doi.org/10.1021/acs.est.7b04438 ( reposiTUm)

Lepuschitz, S., Huhulescu, S., Hyden, P., Springer, B., Rattei, T., Allerberger, F., Mach, R. L., & Ruppitsch, W. (2018). Characterization of a communityacquired- MRSA USA300 isolate from a river sample in Austria and whole genome sequence based comparison to a diverse collection of USA300 isolates. Scientific Reports, 8(9467). https://doi.org/10.1038/s41598-018-27781-8 ( reposiTUm)

Lepuschitz, S., Ruppitsch, W., Pekard-Amenitsch, S., Forsythe, S. J., Cormican, M., Mach, R. L., Piérard, D., & Allerberger, F. (2018). Multicenter Study of Cronobacter sakazakii Infections in Humans, Europe, 2017. Emerging Infectious Diseases, 25(3), 515–522. https://doi.org/10.3201/eid2503.181652 ( reposiTUm)

Demirbas-Uzel, G., De Vooght, L., Parker, A. G., Vreysen, M. J. B., Mach, R. L., Van Den Abbeele, J., & Abd-Alla, A. M. M. (2018). Combining paratransgenesis with SIT: impact of ionizing radiation on the DNA copy number of Sodalis glossinidius in tsetse flies. BMC Microbiology, 18(160). https://doi.org/10.1186/s12866-018-1283-8 ( reposiTUm)

Demirbas-Uzel, G., Parker, A. G., Vreysen, M. J. B., Mach, R. L., Bouyer, J., Takac, P., & Abd-Alla, A. M. M. (2018). Impact of Glossina pallidipes salivary gland hypertrophy virus (GpSGHV) on a heterologous tsetse fly host, Glossina fuscipes fuscipes. BMC Microbiology, 18(161). https://doi.org/10.1186/s12866-018-1276-7 ( reposiTUm)

Demirbas-Uzel, G., Kariithi, H. M., Parker, A. G., Vreysen, M. J. B., Mach, R. L., & Abd-Alla, A. M. M. (2018). Susceptibility of Tsetse Species to Glossina pallidipes Salivary Gland Hypertrophy Virus (GpSGHV). Frontiers in Microbiology, 9. https://doi.org/10.3389/fmicb.2018.00701 ( reposiTUm)

Savio, D., Stadler, P., Reischer, G. H., Kirschner, A. K. T., Demeter, K., Linke, R., Blaschke, A. P., Sommer, R., Szewzyk, U., Wilhartitz, I. C., Mach, R. L., Stadler, H., & Farnleitner, A. H. (2018). Opening the black box of spring water microbiology from alpine karst aquifers to support proactive drinking water resource management. WILEY INTERDISCIPLINARY REVIEWS-WATER, 5(3). https://doi.org/10.1002/wat2.1282 ( reposiTUm)

Lepuschitz, S., Mach, R. L., Springer, B., Allerberger, F., & Ruppitsch, W. (2017). Draft Genome Sequence of a Community-Acquired Methicillin- Resistant Staphylococcus aureus USA300 Isolate from a River Sample. Genome Announcements, 5(42), 2. http://hdl.handle.net/20.500.12708/147155 ( reposiTUm)

Rassinger, A., Machado Mello De Sousa, T., Regnat, K., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2017). Impact of xylanase expression-inducing compounds on DNA accessibility in Trichoderma reesei. MYCOSPHERE, 8(3), 432–444. https://doi.org/10.5943/mycosphere/8/3/5 ( reposiTUm)

Derntl, C., Guzmán-Chávez, F., Machado Mello De Sousa, T., Busse, H.-J., Driessen, A. J. M., Mach, R. L., & Mach-Aigner, A. R. (2017). In Vivo Study of the Sorbicillinoid Gene Cluster in Trichoderma reesei. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.02037 ( reposiTUm)

Druzhinina, I., Laminger, T., Kamravamanesh, D., Pflügl, S., Mauschitz, G., Mach, R. L., Herwig, C., & Friedl, A. (2017). Less plastic waste in the future. Open Access Government, 16, 312–313. http://hdl.handle.net/20.500.12708/147061 ( reposiTUm)

Martzy, R., Kolm, C., Brunner, K., Mach, R. L., Krska, R., Šinkovec, H., Sommer, R., Farnleitner, A. H., & Reischer, G. H. (2017). A loop-mediated isothermal amplification (LAMP) assay for the rapid detection of Enterococcus spp. in water. Water Research, 122, 62–69. https://doi.org/10.1016/j.watres.2017.05.023 ( reposiTUm)

Kolm, C., Martzy, R., Brunner, K., Mach, R. L., Krska, R., Heinze, G., Sommer, R., Reischer, G. H., & Farnleitner, A. H. (2017). A Complementary Isothermal Amplification Method to the U.S. EPA Quantitative Polymerase Chain Reaction Approach for the Detection of Enterococci in Environmental Waters. Environmental Science and Technology, 51(12), 7028–7035. https://doi.org/10.1021/acs.est.7b01074 ( reposiTUm)

Kiesenhofer, D. P., Mach, R. L., & Mach-Aigner, A. R. (2017). Glucose Oxidase Production from Sustainable Substrates. Current Biotechnology, 6(3). https://doi.org/10.2174/2211550105666160712225517 ( reposiTUm)

Kirschner, A. K. T., Reischer, G. H., Jakwerth, S., Savio, D., Ixenmaier, S., Toth, E., Sommer, R., Mach, R. L., Linke, R., Eiler, A., Kolarevic, S., & Farnleitner, A. H. (2017). Multiparametic monitoring of microbial faecal pollution reveals the dominance of human contamination along the whole Danube River. Water Research, 124, 543–555. https://doi.org/10.1016/j.watres.2017.07.052 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2017). Transcription factor Xpp1 is a switch between primary and secondary fungal metabolism. Proceedings of the National Academy of Sciences, 114(4), 560–569. http://hdl.handle.net/20.500.12708/146973 ( reposiTUm)

Gupta, V. K., Stecca Steindorff, A., Graciano de Paula, R., Silva-Rocha, R., Mach-Aigner, A. R., Mach, R. L., & Silva, R. N. (2016). The Post-genomic Era of Trichoderma reesei: What’s Next? Trends in Biotechnology, 34(12), 970–982. https://doi.org/10.1016/j.tibtech.2016.06.003 ( reposiTUm)

Derntl, C., Rassinger, A., Srebotnik, E., Mach, R. L., & Mach-Aigner, A. R. (2016). Identification of the Main Regulator Responsible for Synthesis of the Typical Yellow Pigment Produced by Trichoderma reesei. Applied and Environmental Microbiology, 82(20), 6247–6257. http://hdl.handle.net/20.500.12708/149197 ( reposiTUm)

Mayer, R. E., Bofill-Mas, S., Egle, L., Reischer, G. H., Schade, M., Fernandez-Cassi, X., Fuchs, W., Mach, R. L., Lindner, G., Kirschner, A., Gaisbauer, M., Piringer, H., Blaschke, A. P., Girones, R., Zessner, M., Sommer, R., & Farnleitner, A. H. (2016). Occurrence of human-associated Bacteroidetes genetic source tracking markers in raw and treated wastewater of municipal and domestic origin and comparison to standard and alternative indicators of faecal pollution. Water Research, 90, 265–276. https://doi.org/10.1016/j.watres.2015.12.031 ( reposiTUm)

Garcia, E. G., Farnleitner, A. H., Mach, R. L., Krska, R., & Brunner, K. (2016). A rapid genomic DNA extraction method and its combination with helicase dependent amplification for the detection of genetically modified maize. Analytical Methods, 8(1), 136–141. https://doi.org/10.1039/c5ay02628h ( reposiTUm)

Mello-de-Sousa, T. M., Rassinger, A., Derntl, C., Poças-Fonseca, M. J., Mach, R. L., & Mach-Aigner, A. R. (2016). The Relation Between Promoter Chromatin Status, Xyr1 and Cellulase Expression in Trichoderma reesei. Current Genomics, 17(2), 145–152. https://doi.org/10.2174/1389202917666151116211812 ( reposiTUm)

Kolm, C., Mach, R. L., Krska, R., & Brunner, K. (2015). A rapid DNA lateral flow test for the detection of transgenic maize by isothermal amplification of the 35S promoter. Analytical Methods, 7(1), 129–134. https://doi.org/10.1039/c4ay01997k ( reposiTUm)

Derntl, C., Rassinger, A., Srebotnik, E., Mach, R. L., & Mach-Aigner, A. R. (2015). Xpp1 regulates the expression of xylanases, but not of cellulases in Trichoderma reesei. Biotechnology for Biofuels, 8(112). https://doi.org/10.1186/s13068-015-0298-8 ( reposiTUm)

Derntl, C., Kiesenhofer, D., Mach, R. L., & Mach-Aigner, A. R. (2015). Novel Strategies for Genomic Manipulation of Trichoderma reesei with the Purpose of Strain Engineering. Applied and Environmental Microbiology, 81(18), 6314–6323. http://hdl.handle.net/20.500.12708/151012 ( reposiTUm)

Preiser, V., Goetsch, D., Sulyok, M., Krska, R., Mach, R. L., Farnleitner, A., & Brunner, K. (2015). The development of a multiplex real-time PCR to quantify Fusarium DNA of trichothecene and fumonisin producing strains in maize. Analytical Methods, 7(4), 1358–1365. https://doi.org/10.1039/c4ay02581d ( reposiTUm)

Mayer, R., Vierheilig, J., Egle, L., Reischer, G., Saracevic, E., Mach, R. L., Kirschner, A. K. T., Zessner, M., Sommer, R., & Farnleitner, A. H. (2015). Automated Sampling Procedures Supported by High Persistence of Bacterial Fecal Indicators and Bacteroidetes Genetic Microbial Source Tracking Markers in Municipal Wastewater during Short-Term Storage at 5°C. Applied and Environmental Microbiology, 81(15), 5134–5143. http://hdl.handle.net/20.500.12708/151222 ( reposiTUm)

Ressmann, A., Gonzales Garcia, E., Khlan, D., Gärtner, P., Mach, R. L., Krska, R., Brunner, K., & Schröder, K. (2015). Fast and efficient extraction of DNA from meat and meat derived products using aqueous ionic liquid buffer systems. New Journal of Chemistry, 39(6), 4994–5002. https://doi.org/10.1039/c5nj00178a ( reposiTUm)

Machado Mello De Sousa, T., Rassinger, A., Pucher, M. E., dos Santos Castro, L., Persinoti, G. F., Silva-Rocha, R., Poças-Fonseca, M. J., Mach, R. L., Nascimento Silva, R., & Mach-Aigner, A. R. (2015). The impact of chromatin remodelling on cellulase expression in Trichoderma reesei. BMC Genomics, 16(588). https://doi.org/10.1186/s12864-015-1807-7 ( reposiTUm)

Savio, D. F., Sinclair, L., Ijaz, U. Z., Parajka, J. D., Reischer, G., Stadler, P., Blaschke, A. P., Blöschl, G., Mach, R. L., Kirschner, A. K. T., Farnleitner, A. H., & Eiler, A. (2015). Bacterial diversity along a 2600 km river continuum. Environmental Microbiology, 17(12), 4994–5007. http://hdl.handle.net/20.500.12708/151961 ( reposiTUm)

Vierheilig, J., Savio, D. F., Ley, R. E., Mach, R. L., Farnleitner, A. H., & Reischer, G. (2015). Potential applications of next generation DNA sequencing of 16S rRNA gene amplicons in microbial water quality monitoring. Water Science & Technology, 72(11), 1962–1972. https://doi.org/10.2166/wst.2015.407 ( reposiTUm)

Ryzinska-Paier, G., Lendenfeld, T., Correa, K., Stadler, P., Blaschke, A. P., Mach, R. L., Stadler, H., Kirschner, A. K. T., & Farnleitner, A. H. (2014). A sensitive and robust method for automated on-line monitoring of enzymatic activities in water and water resources. Water Science & Technology, 69(6), 1349–1358. https://doi.org/10.2166/wst.2014.032 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Rassinger, A., Poças-Fonseca, M. J., Mach, R. L., & Mach-Aigner, A. R. (2014). A truncated form of the Carbon catabolite repressor 1 increases cellulase production in Trichoderma reesei. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 7(129). https://doi.org/10.1186/s13068-014-0129-3 ( reposiTUm)

Gonzalez Garcia, E., Ressmann, A., Gärtner, P., Zirbs, R., Mach, R. L., Krska, R., Bica, K., & Brunner, K. (2014). Direct extraction of genomic DNA from maize with aqueous ionic liquid buffer systems for applications in genetically modified organisms analysis. Analytical and Bioanalytical Chemistry, 406(30), 7773–7784. https://doi.org/10.1007/s00216-014-8204-y ( reposiTUm)

Zahradnik, C., Kolm, C., Martzy, R., Mach, R. L., Krska, R., Farnleitner, A. H., & Brunner, K. (2014). Detection of the 35S promoter in transgenic maize via various isothermal amplification techniques: a practical approach. Analytical and Bioanalytical Chemistry, 406(27), 6835–6842. https://doi.org/10.1007/s00216-014-7889-2 ( reposiTUm)

Zahradnik, C., Martzy, R., Mach, R. L., Krska, R., Farnleitner, A. H., & Brunner, K. (2014). Detection of the food allergen celery via loop-mediated isothermal amplification technique. Analytical and Bioanalytical Chemistry, 406(27), 6827–6833. https://doi.org/10.1007/s00216-014-7873-x ( reposiTUm)

Jovanović, B., Mach, R. L., & Mach-Aigner, A. R. (2014). Erythritol production on wheat straw using Trichoderma reesei. AMB Express, 4(34). https://doi.org/10.1186/s13568-014-0034-y ( reposiTUm)

Reithner, B., Mach-Aigner, A. R., Herrera-Estrella, A., & Mach, R. L. (2014). Trichoderma atroviride Transcriptional Regulator Xyr1 Supports the Induction of Systemic Resistance in Plants. Applied and Environmental Microbiology, 80(17), 5274–5281. http://hdl.handle.net/20.500.12708/156890 ( reposiTUm)

Klaubauf, S., Narang, H. M., Post, H., Zhou, M., Brunner, K., Mach-Aigner, A. R., Mach, R. L., Heck, A. J. R., Altelaar, A. F. M., & de Vries, R. P. (2014). Similar is not the same: Differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi. Fungal Genetics and Biology, 72, 73–81. https://doi.org/10.1016/j.fgb.2014.07.007 ( reposiTUm)

Vierheilig, J., Frick, C., Mayer, R., Kirschner, A., Reischer, G., Derx, J., Mach, R. L., Sommer, R., & Farnleitner, A. H. (2013). Clostridium perfringens Is Not Suitable for the Indication of Fecal Pollution from Ruminant Wildlife but Is Associated with Excreta from Nonherbivorous Animals and Human Sewage. Applied and Environmental Microbiology, 79(16), 5089–5092. http://hdl.handle.net/20.500.12708/155318 ( reposiTUm)

Jovanović, B., Mach, R. L., & Mach-Aigner, A. R. (2013). Characterization of erythrose reductases from filamentous fungi. AMB Express, 3(43). https://doi.org/10.1186/2191-0855-3-43 ( reposiTUm)

Derntl, C., Gudynaite-Savitch, L., Calixte, S., White, T., Mach, R. L., & Mach-Aigner, A. R. (2013). Mutation of the Xylanase regulator 1 causes a glucose blind hydrolase expressing phenotype in industrially used Trichoderma strains. Biotechnology for Biofuels, 6(62). https://doi.org/10.1186/1754-6834-6-62 ( reposiTUm)

Gorsche, R., Jovanovic, B., Gudynaite-Savitch, L., Mach, R. L., & Mach-Aigner, A. R. (2013). A highly sensitive in vivo footprinting technique for condition-dependent identifcation of cis elements. Nucleic Acids Research, 42(1), e1–e1. https://doi.org/10.1093/nar/gkt883 ( reposiTUm)

Reischer, G., Ebdon, J. E., Bauer, J. M., Schuster, N., Ahmed, W., Aström, J., Blanch, A. R., Blöschl, G., Byamukama, D., Coakley, T., Ferguson, C., Goshu, G., Ko, G., de Roda Husman, A. M., Mushi, D., Poma, R., Pradhan, B., Rajal, V., Schade, M. A., … Farnleitner, A. (2013). Performance Characteristics of qPCR Assays Targeting Human- and Ruminant-Associated Bacteroidetes for Microbial Source Tracking across Sixteen Countries on Six Continents. Environmental Science and Technology, 47(15), 8548–8556. https://doi.org/10.1021/es304367t ( reposiTUm)

Mushi, D., Byamukama, D., Kirschner, A. K. T., Mach, R. L., Brunner, K., & Farnleitner, A. H. (2012). Sanitary inspection of wells using risk-of-contamination scoring indicates a high predictive ability for bacterial faecal pollution in the peri-urban tropical lowlands of Dar es Salaam,Tanzania. Journal of Water & Health, 10(2), 236–243. https://doi.org/10.2166/wh.2012.117 ( reposiTUm)

Zeinzinger, J., Pietzka, A. T., Stöger, A., Kornschober, C., Kunert, R., Allerberger, F., Mach, R. L., & Ruppitsch, W. (2012). One-Step Triplex High-Resolution Melting Analysis for Rapid Identification and Simultaneous Subtyping of Frequently Isolated Salmonella Serovars. Applied and Environmental Microbiology, 78(9), 3352–3360. http://hdl.handle.net/20.500.12708/164035 ( reposiTUm)

Stadler, H., Sommer, R., Kirschner, A. K. T., Reischer, G., Mach, R. L., & Farnleitner, A. H. (2012). Neue Erkenntnisse zur mikrobiologischen Qualitätsdynamik an ausgewählten Karstquellen der Nördlichen Kalkalpen mittels automatisierter und feldtauglicher Untersuchungsmethoden. Beiträge Zur Hydrogeologie, 59, 95–108. http://hdl.handle.net/20.500.12708/164439 ( reposiTUm)

Steiger, M., Vitikainen, M., Uskonen, P., Brunner, K., Adam, G., Pakula, T., Penttilä, M. E., Saloheimo, M., Mach, R. L., & Mach-Aigner, A. R. (2011). Transformation System for Hypocrea jecorina (Trichoderma reesei) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers. Applied and Environmental Microbiology, 77(1), 114–121. http://hdl.handle.net/20.500.12708/162158 ( reposiTUm)

Stalder, G. L., Sommer, R., Walzer, C., Mach, R. L., Beiglböck, C., Blaschke, A. P., & Farnleitner, A. H. (2011). Gefährdungs- und risikobasierende Konzepte zur Bewertung der mikrobiologischen Wasserqualität - Teil 1. WIENER TIERARZTLICHE MONATSSCHRIFT, 98(1–2), 9–24. http://hdl.handle.net/20.500.12708/161637 ( reposiTUm)

Steiger, M. G., Mach-Aigner, A. R., Gorsche, R., Rosenberg, E. E., Mihovilovic, M. D., & Mach, R. L. (2011). Synthesis of an antiviral drug precursor from chitin using a saprophyte as a whole-cell catalyst. Microbial Cell Factories, 10(102). https://doi.org/10.1186/1475-2859-10-102 ( reposiTUm)

Mach-Aigner, A. R., Gudynaite-Savitch, L., & Mach, R. L. (2011). L-Arabitol Is the Actual Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei). Applied and Environmental Microbiology, 77(17), 5988–5994. http://hdl.handle.net/20.500.12708/162652 ( reposiTUm)

Zembek, P., Perlińska-Lenart, U., Brunner, K., Reithner, B., Palamarczyk, G., Mach, R. L., & Kruszewska, J. S. (2011). Elevated Activity of Dolichyl Phosphate Mannose Synthase Enhances Biocontrol Abilities of Trichoderma atroviride. Molecular Plant-Microbe Interactions, 24(12), 1522–1529. https://doi.org/10.1094/mpmi-02-11-0025 ( reposiTUm)

Reithner, B., Ibarra-Laclette, E., Mach, R. L., & Herrera-Estrella, A. (2011). Identification of Mycoparasitism-Related Genes in Trichoderma atroviride. Applied and Environmental Microbiology, 77(13), 4361–4370. http://hdl.handle.net/20.500.12708/162176 ( reposiTUm)

Pucher, M. E., Steiger, M. G., Mach, R. L., & Mach-Aigner, A. R. (2011). A modified expression of the major hydrolase activator in Hypocrea jecorina (Trichoderma reesei) changes enzymatic catalysis of biopolymer degradation. Catalysis Today, 167(1), 122–128. https://doi.org/10.1016/j.cattod.2010.12.038 ( reposiTUm)

Reischer, G. H., Kollanur, D., Vierheilig, J., Wehrspaun, C., Mach, R. L., Sommer, R., Stadler, H., & Farnleitner, A. H. (2011). Hypothesis-Driven Approach for the Identification of Fecal Pollution Sources in Water Resources. Environmental Science and Technology, 45(9), 4038–4045. https://doi.org/10.1021/es103659s ( reposiTUm)

Steiger, M. G., Mach, R. L., & Mach-Aigner, A. R. (2010). An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei). Journal of Biotechnology, 145(1), 30–37. https://doi.org/10.1016/j.jbiotec.2009.10.012 ( reposiTUm)

Mushi, D., Byamukama, D., Kivaisi, A. K., Mach, R. L., & Farnleitner, A. H. (2010). Sorbitol-fermenting Bifidobacteria are indicators of very recent human faecal pollution in streams and groundwater habitats in urban tropical lowlands. Journal of Water & Health, 8(3), 466–478. https://doi.org/10.2166/wh.2010.116 ( reposiTUm)

Farnleitner, A. H., Ryzinska-Paier, G., Reischer, G. H., Burtscher, M. M., Knetsch, S., Kirschner, A. K. T., Dirnböck, T., Kuschnig, G., Mach, R. L., & Sommer, R. (2010). Escheria coli and enterococci are sensitive and reliable indicators for human, livestock and wildlife faecal pollution in alpine mountainous water resources. Journal of Applied Microbiology, no-no. https://doi.org/10.1111/j.1365-2672.2010.04788.x ( reposiTUm)

Stadler, H., Klock, E., Skritek, P., Mach, R. L., Zerobin, W., & Farnleitner, A. H. (2010). The spectral absorption coefficient at 254 nm as a real-time early warning proxy for detecting faecal pollution events at alpine karst water resources. WATER SCIENCE AND TECHNOLOGY, 62(8), 1898–1906. http://hdl.handle.net/20.500.12708/167531 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M. E., & Mach, R. L. (2010). D-Xylose as a Repressor or Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei). Applied and Environmental Microbiology, 76(6), 1770–1776. https://doi.org/10.1128/aem.02746-09 ( reposiTUm)

Mach-Aigner, A. R., Grosstessner-Hain, K., Pocas-Fonseca, M., Mechtler, K., & Mach, R. L. (2010). From an electrophoretic mobility shift assay to isolated transcription factors : a fast genomic-proteomic approach. BMC Genomics, 11, 644–653. http://hdl.handle.net/20.500.12708/167533 ( reposiTUm)

Kirschner, A. K. T., Kavka, G. G., Velimirov, B., Mach, R. L., Sommer, R., & Farnleitner, A. H. (2009). Microbiological water quality along the Danube River : Integrating data from two whole-river surveys and a transnational monitoring network. Water Research, 43(15), 3673–3684. https://doi.org/10.1016/j.watres.2009.05.034 ( reposiTUm)

Burtscher, M. M., Zibuschka, F., Mach, R. L., Lindner, G., & Farnleitner, A. H. (2009). Heterotrophic plate count vs. in situ bacterial 16S rRNA gene amplicon profiles from drinking water reveal completely different communities with distinct spatial and temporal allocations in a distribution net. Water SA, 35(4), 495–504. http://hdl.handle.net/20.500.12708/165801 ( reposiTUm)

Wilhartitz, I. C., Kirschner, A. K. T., Stadler, H., Herndl, G. J., Dietzel, M., Latal, C., Mach, R. L., & Farnleitner, A. H. (2009). Heterotrophic prokaryotic production in ultraoligotrophic alpine karst aquifers and ecological implications. FEMS Microbiology Ecology, 68(3), 287–299. https://doi.org/10.1111/j.1574-6941.2009.00679.x ( reposiTUm)

Kemptner, J., Marchetti-Deschmann, M., Mach, R., Druzhinina, I. S., Kubicek, C. P., & Allmaier, G. (2009). Evaluation of matrix-assisted laser desorption/ionization (MALDI) preparation techniques for surface characterization of intact Fusarium spores by MALDI linear time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 23(6), 877–884. https://doi.org/10.1002/rcm.3949 ( reposiTUm)

Manandhar, S. A., Byamukama, D., Shrestha, R. R., Haberl, R., Mach, R. L., & Farnleitner, A. H. (2009). Use of faecal pollution indicators to estimate pathogen die off conditions in source separated faeces in Kathmandu Valley, Nepal. Journal of Water & Health, 7(1), 97–107. https://doi.org/10.2166/wh.2009.149 ( reposiTUm)

Brunner, K., Kovalsky Paris, M. P., Paolino, G., Bürstmayr, H., Lemmens, M., Berthiller, F., Schuhmacher, R., Krska, R., & Mach, R. L. (2009). A reference-gene-based quantitative PCR method as a tool to determine Fusarium resistance in wheat. Analytical and Bioanalytical Chemistry, 395(5), 1385–1394. https://doi.org/10.1007/s00216-009-3083-3 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M. E., Steiger, M. G., Bauer, G. E., Preis, S. J., & Mach, R. L. (2008). Transcriptional regulation of xyr1 , encoding the main regulator of the xylanolytic and cellulolytic enzyme system in Hypocrea jecorina. Applied and Environmental Microbiology, 74(21), 6554–6562. https://doi.org/10.1128/aem.01143-08 ( reposiTUm)

Reischer, G., Kavka, G. G., Kasper, D., Winter, C., Mach, R. L., & Farnleitner, A. H. (2008). Applicability of DNA based quantitative microbial source tracking (QMST) evaluated on a large scale in the Danube River and its important tributaries. Fundamental and Applied Limnology, 162 / SUPPL.LARGE RIVERS VOL.18(1–2), 117–125. http://hdl.handle.net/20.500.12708/170824 ( reposiTUm)

Stadler, H., Skritek, P., Sommer, R., Mach, R. L., Zerobin, W., & Farnleitner, A. H. (2008). Microbiological monitoring and automated event sampling at karst springs using LEO-satellites. Water Science & Technology, 58(4), 899–909. https://doi.org/10.2166/wst.2008.442 ( reposiTUm)

Stricker, A. R., Mach, R. L., & de Graaff, L. H. (2008). Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Applied Microbiology and Biotechnology, 78(2), 211–220. https://doi.org/10.1007/s00253-007-1322-0 ( reposiTUm)

Stricker, A. R., Wilhartitz, I., Farnleitner, A. H., & Mach, R. L. (2008). Development of a scorpion probe-based real-time PCR for the sensitive quantification of Bacteroides sp.ribosomal DNA from evaluation in spring water matrices. Microbiological Research, 163(2), 140–147. https://doi.org/10.1016/j.micres.2006.03.012 ( reposiTUm)

Stricker, A. R., Trefflinger, P., Aro, N., Penttilä, M., & Mach, R. L. (2008). Role of Ace2 (Activator of Cellulases 2) within the xyn2 transcriptosome of Hypocrea jecorina. Fungal Genetics and Biology, 45(4), 436–445. https://doi.org/10.1016/j.fgb.2007.08.005 ( reposiTUm)

Reischer, G., Haider, J., Sommer, R., Stadler, H., Keiblinger, K., Hornek, R., Zerobin, W., Mach, R. L. ., & Farnleitner, A. (2008). Quantitative microbial faecal source tracking with sampling guided by hydrological catchment dynamics. Environmental Microbiology, 10(10), 2598–2608. https://doi.org/10.1111/j.1462-2920.2008.01682.x ( reposiTUm)

Winter, C., Hein, T., Kavka, G. G., Mach, R. L., & Farnleitner, A. H. (2007). Longitudinal Changes in the Bacterial Community Composition of the Danube River: a Whole-River Approach. Applied and Environmental Microbiology, 73(2), 421–431. http://hdl.handle.net/20.500.12708/169278 ( reposiTUm)

Reischer, G., Kasper, D., Steinborn, R., Farnleitner, A. H., & Mach, R. L. (2007). A quantitative real-time PCR assay for the hihgly sensitive and specific detection of human faceal influence in spring water from a large alpine catement area. Letters in Applied Microbiology, 44, 351–356. http://hdl.handle.net/20.500.12708/169483 ( reposiTUm)

Wilhartitz, I., Mach, R. L., Teira, E., Herndl, G., & Farnleitner, A. H. (2007). Prokaryotic community analysis with CARD-FISH IN comparsion with FISH in ultra-oligotropic ground- and drinking water. Journal of Applied Microbiology, 103, 871–881. http://hdl.handle.net/20.500.12708/169481 ( reposiTUm)

Brunner, K., Lichtenauer, A. M., Kratochwill, K., Delic, M., & Mach, R. L. (2007). Xyr1 regulates xylanase but not cellulase formation in the head blight fungus Fusarium graminearum. Current Genetics, 52, 213–220. http://hdl.handle.net/20.500.12708/169484 ( reposiTUm)

Stricker, A. R., Steiger, M., & Mach, R. L. (2007). Xyr1 receives the lactose induction signal and regulates lactose metabolism in Hypocrea jecorina. FEBS Letters, 581, 3915–3920. http://hdl.handle.net/20.500.12708/169485 ( reposiTUm)

Hornek, R., Pommerening-Röser, A., Koops, H.-P., Farnleitner, A. H., Kreuzinger, N., Kirschner, A., & Mach, R. L. (2006). Primers containing universal bases reduce multiple amoA gene specific DGGE band patterns when analysing the diversity of beta - ammonia oxidizers in the environment. Journal of Microbiological Methods, 66, 147–155. http://hdl.handle.net/20.500.12708/173644 ( reposiTUm)

Burtscher, M. M., Köllner, Krista. E., Sommer, R., Keiblinger, K., Farnleitner, A. H., & Mach, R. L. (2006). Development of a novel amplified fragment length polymorphism (AFLP) typing method for enterococci isolates from cattle faecces and evaluation of the single versus pooled faecal sampling approach. Journal of Microbiological Methods, 67, 281–293. http://hdl.handle.net/20.500.12708/173247 ( reposiTUm)

Rauscher, R., Würleitner, E., Wacenovsky, C., Aro, N., Stricker, A. R., Zeilinger, S., Kubicek, C. P., Penttilä, M. E., & Mach, R. L. (2006). Transciptional Regulation of xyn1, Encoding Xylanase I, in Hypocrea jecorina. Eukaryotic Cell, 5(7), 447–456. http://hdl.handle.net/20.500.12708/173250 ( reposiTUm)

Reischer, G., Kasper, D., Steinborn, R., Mach, R. L., & Farnleitner, A. H. (2006). Quantitative PCR Method for Sensitive Detection of Ruminant Fecal Pollution in Freshwater and Evaluations of This Method in Alpine Karstic Regions. Applied and Environmental Microbiology, 72(8), 5610–5614. http://hdl.handle.net/20.500.12708/173248 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., Würleitner, E., & Mach, R. L. (2006). Xyr1(Xylanase Regulator 1) Regulates both the Hydrolytic Enzyme System and D-Xylose Metabolism in Hypocrea jecorina. Eukaryotic Cell, 5(12), 1–10. http://hdl.handle.net/20.500.12708/173249 ( reposiTUm)

Farnleitner, A. H., Wilhartitz, I., Ryzinska, G., Kirschner, A., Stadler, H., Burtscher, M. M., Hornek, R., Szewzyk, U., Herndl, G., & Mach, R. L. (2005). Bacterial dynamics in spring water of alpine karst aquifers indicates the presence of stable autochthonous microbial endokarst communities. Environmental Microbiology, 7(8), 1248–1259. http://hdl.handle.net/20.500.12708/173483 ( reposiTUm)

Byamukama, D., Farnleitner, A. H., Kansiime, F., Manafi, M., Burtscher, M. M., & Mach, R. L. (2005). Contrasting occurrence of Chromobacterium violaceum in tropical drinking water springs of Uganda. Journal of Water & Health, 03(3), 229–238. http://hdl.handle.net/20.500.12708/172915 ( reposiTUm)

Brunner, K., Zeilinger, S., Ciliento, R., Woo, S. L., Lorito, M., Kubicek, C. P., & Mach, R. L. (2005). Improvement of the Fungal Biocontrol Agent Trichoderma atroviride To Enhance both Antagonism and Induction of Plant Systemic Disease Resistance. Applied and Environmental Microbiology, 71(7), 3959–3965. http://hdl.handle.net/20.500.12708/172914 ( reposiTUm)

Zechmeister, T. C., Kirschner, A. K. T., Fuchsberger, M., Gruber, S. G., Süß, B., Rosengarten, R., Pittner, F., Mach, R. L., Herzig, A., & Farnleitner, A. H. (2005). Prevalence of Botulinum Neurotoxin C1 and its Corresponding Gene in Environmental Samples from Low and High Risk Avian Botulism Areas. Altex - Alternativen Zu Tierexperimenten, 22(3), 185–195. http://hdl.handle.net/20.500.12708/172913 ( reposiTUm)

Zeilinger, S., Reithner, B., Scala, V., Peissl, I., Lorito, M., & Mach, R. L. (2005). Signal Transduction by Tga3, a Novel G Protein α Subnuit of Trichoderma atroviride. Applied and Environmental Microbiology, 71(3), 1591–1597. http://hdl.handle.net/20.500.12708/172912 ( reposiTUm)

Farnleitner, A. H., Wilhartitz, I., Reischer, G., Burtscher, M. M., & Mach, R. L. (2005). Möglichkeiten und Grenzen molekularbiologischer Techniken in der Untersuchung der mikrobiologischen Wasserqualität. Deutsche Lebensmittel-Rundschau, 101(10), 446–456. http://hdl.handle.net/20.500.12708/172911 ( reposiTUm)

Mihovilovic, M. D., Rudroff, F., Grötzl, B., Kapitan, P., Rydz, J., & Mach, R. L. (2005). Family Clustering of Baeyer-Villiger Monooxygenase Based on Protein Sequences and Stereopreference. Angewandte Chemie International Edition, 44, 3609–3613. http://hdl.handle.net/20.500.12708/172848 ( reposiTUm)

Derx, J., Valent, P., Steinbacher, S., Ameen, A., König, A.-M., Demeter, K., Linke, R., Sommer, R., Lindner, G., Schmalwieser, A. W., Walochnik, J., Kirschner, A., Mach, R. L., Cervero-Aragó, S., Zessner, M., Kittlaus, S., Blöschl, G., Stevenson, M., Blaschke, A. P., & Farnleitner, A. H. (2025). Resilience to Future Changes: Assessing the Impact of Human Wastewater Emissions on Microbiological Water Safety Along the Danube . In EGU General Assembly 2025. EGU General Assembly 2025, Wien, Austria. https://doi.org/10.5194/egusphere-egu25-8167 ( reposiTUm)

Reischer, G., Kolm, C., Kreuter, J., Pesau, N., Martzy, R., Mach, R., Krska, R., Kirschner, A., Sommer, R., & Farnleitner, A. (2023). Concepts and solutions for rapid, on-site molecular diagnostics of microbiological water quality. In WATERMICRO 23 Abstract Book (pp. 756–757). http://hdl.handle.net/20.500.12708/194614 ( reposiTUm)

Mayer, R., Linke, R., Vierheilig, J., Reischer, G., Mach, R. L., Kirschner, A. K. T., Zessner, M., Farnleitner, A. H., & Sommer, R. (2021). High persistence of genetic and cultivation-based bacterial fecal indicators in communal waste water at 5°C supports proportional autosampling procedures over 24h. In Abstracts (p. 2). http://hdl.handle.net/20.500.12708/50842 ( reposiTUm)

Till, P., Martzy, R., Derntl, C., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2020). lnteraction of a fungal lncRNA with a transactivator enhances cellulase production in Trichoderma reesei. In Program & Abstracts (pp. 257–258). http://hdl.handle.net/20.500.12708/49587 ( reposiTUm)

Hochenegger, N., Vignolle, G. A., Mach, R. L., Druzhinina, I., Mach-Aigner, A. R., & Derntl, C. (2020). Bioprospecting a newly identified fungus from the Borneo rain forest regarding its bioactive properties. In Program & Abstracts (p. 222). http://hdl.handle.net/20.500.12708/49582 ( reposiTUm)

Masi, A., Mach, R. L., & Mach-Aigner, A. R. (2020). Understanding parameters enhancing erythritol consumption, a prerequisite to the development of an efflcient erythritol production process in T. reesei. In Program & Abstracts (p. 234). http://hdl.handle.net/20.500.12708/49583 ( reposiTUm)

Regnat, K., Masi, A., Mach, R. L., & Mach-Aigner, A. R. (2020). Erythritol in Trichoderma reesei - Construction of a multirecombinant production strain. In Program & Abstracts (p. 241). http://hdl.handle.net/20.500.12708/50773 ( reposiTUm)

Vignolle, G. A., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2020). Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp. In ECFG15 - 15th European Conference on Fungal Genetics (Program and Abstracts). ECFG15 - 15th European Conference on Fungal Genetics, Rom, Italy. http://hdl.handle.net/20.500.12708/50775 ( reposiTUm)

Derntl, C., Hochenegger, N., Seidl, B. K., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2020). A pair of transcription factors regulates the switch between primary and secondary metabolism. In Program & Abstracts (p. 242). http://hdl.handle.net/20.500.12708/50774 ( reposiTUm)

Tomico Cuenca, I., Derntl, C., Seidl, B. K., Mach, R. L., Schuhmacher, R., & Mach-Aigner, A. R. (2020). Fusion transcription factors as a tool for controlled gene overexpression in Trichoderma reesei. In Program & Abstracts (p. 76). http://hdl.handle.net/20.500.12708/50770 ( reposiTUm)

Regnat, K., Beisl, S., Friedl, A., Mach, R. L., & Mach-Aigner, A. R. (2019). Erythritol from straw A multilevel feasibility study in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50553 ( reposiTUm)

Till, P., Pucher, M., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2019). Transactivator and long non-coding RNA meet for regulation of cellulase formation in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50550 ( reposiTUm)

Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2019). Usage of an estradiol-inducible fusion transactivation domain for controlled gene expression in Trchoderma reesei. In Abstract Book (p. 1). http://hdl.handle.net/20.500.12708/50429 ( reposiTUm)

Till, P., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2019). LncRNA and transactivator meet for regulation of cellulase-encoding gene expression. In Abstract Book (p. 1). http://hdl.handle.net/20.500.12708/50409 ( reposiTUm)

Hochenegger, N., Mach, R. L., Druzhinina, I., Mach-Aigner, A. R., & Derntl, C. (2019). Bioprospecting of fungi from the Borneo rain forest regarding their bioactive properties. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50425 ( reposiTUm)

Kirschner, A. K. T., Reischer, G., Jakwerth, S., Savio, D. F., Ixenmaier, S., Toth, E., Sommer, R., Mach, R. L., Linke, R., Eiler, A., Kolarevic, S., & Farnleitner, A. H. (2019). Source tracking of microbial faecal pollution along a 2600 km stretch of the River Danube. In Abstractbook (p. 1). http://hdl.handle.net/20.500.12708/50651 ( reposiTUm)

Kolm, C., Martzy, R., Führer, M., Mach, R. L., Krska, R., Baumgartner, S., Farnleitner, A. H., & Reischer, G. (2019). Detection of a microbial source tracking marker by isothermal helicasedependent amplification and a nucleic acid lateralflow strip test. In Abstractbook (p. 2). http://hdl.handle.net/20.500.12708/50650 ( reposiTUm)

Savio, D. F., Karl, M., Stadler, P., Reischer, G., Demeter, K., Linke, R., Blaschke, A. P., Mach, R. L., Kirschner, A. K. T., Stadler, H., & Farnleitner, A. H. (2019). Highthroughput 16S rRNA gene amplicon sequencing for the characterisation of the drinking water microbiome from an alpine karst spring. In Abstractbook (p. 1). http://hdl.handle.net/20.500.12708/50653 ( reposiTUm)

Linke, R., Zeki, S., Mayer, R., Keiblinger, K., Mach, R. L., Derx, J., Sommer, R., Reischer, G., & Farnleitner, A. H. (2019). Loss of DNA to surface-reactive matrix compounds during extraction - the need for comprehensive process controls in molecular diagnostics ofwater samples. In Abstractbook (p. 1). http://hdl.handle.net/20.500.12708/50658 ( reposiTUm)

Derntl, C., Hochenegger, N., Seidl, B. K., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2019). Regulation of the Primary and Secondary Metabolism in Fungi by a pair of Transcription Factors. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50551 ( reposiTUm)

Vignolle, G. A., Seidl, B. K., Mach, R. L., Schuhmacher, R., Mach-Aigner, A. R., & Derntl, C. (2019). New approaches in genome mining reveal conserved RiPPs in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50554 ( reposiTUm)

Seidl, B. K., Derntl, C., Mach, R. L., Mach-Aigner, A. R., & Schuhmacher, R. (2019). An LC-HRMS Based Metabolomics Workflow to Investigate the Sorbicillinoid Biosynthesis in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50552 ( reposiTUm)

Tomico Cuenca, I., Derntl, C., Seidl, B. K., Mach, R. L., Schuhmacher, R., & Mach-Aigner, A. R. (2019). Development of synthetic transcription factors to activate biosynthetic gene clusters. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50549 ( reposiTUm)

Derntl, C., Mello de Sousa, T. M., Regnat, K., Rassinger, A., Mach, R. L., & Mach-Aigner, A. R. (2018). Synthetic transcription factors and expression system in Trichoderma reesei. In Abstract Book (p. 222). http://hdl.handle.net/20.500.12708/50382 ( reposiTUm)

Farnleitner, A. H., Savio, D. F., Jakwerth, S., Ixenmaier, S., Toth, E., Sommer, R., Linke, R., Mach, R. L., Kolarevic, S., Reischer, G., & Kirschner, A. K. T. (2018). Elucidating the extent and sources of faecal pollution along the whole Danube River: when Robert Koch meets Kary Mullis. In Abstracts (p. 10). http://hdl.handle.net/20.500.12708/50208 ( reposiTUm)

Martzy, R., Kolm, C., Mach, R. L., Krska, R., Jakwerth, S., Kirschner, A. K. T., Sommer, R., Farnleitner, A. H., & Reischer, G. (2018). A field-deployable concept for the rapid molecular detection of fecal contamination in water. In Abstracts (p. 58). http://hdl.handle.net/20.500.12708/50210 ( reposiTUm)

Kolm, C., Martzy, R., Führer, M., Mach, R. L., Krska, R., Baumgartner, S., Farnleitner, A. H., & Reischer, G. (2018). Tracking ruminant fecal pollution in water by isothermal amplification and a disposable strip test. In Abstracts (p. 11). http://hdl.handle.net/20.500.12708/50209 ( reposiTUm)

Rassinger, A., Mello de Sousa, T. M., Regnat, K., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2017). Impact of inducer molecules on DNA accessibility in cellulase and xylanase expression in Trichoderma reesei. In Book of Abstracts (pp. 76–77). http://hdl.handle.net/20.500.12708/49816 ( reposiTUm)

Linke, R., Zeki, S., Mayer, R., Keiblinger, K., Mach, R. L., Sommer, R., Reischer, G., & Farnleitner, A. H. (2017). Quantitative PCR tools for cultivation-independent analysis of microbial faecal pollution in water - the need for a continuous sample processing control. In Book of Abstracts (p. 47). http://hdl.handle.net/20.500.12708/50059 ( reposiTUm)

Mello de Sousa, T. M., Derntl, C., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2017). When more is less: high productivity contributes to strain degeneration in Trichoderma reesei. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/49996 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., & Mach-Aigner, A. R. (2017). A new activator of cellulase expression in Trichoderma reesei. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/49995 ( reposiTUm)

Martzy, R., Kolm, C., Brunner, K., Mach, R. L., Krska, R., Sinkovec, H., Sommer, R., Farnleitner, A. H., & Reischer, G. (2017). A loop-mediated isothermal amplification (LAMP) assay for the rapid detection of Enterococcus spp. in water. In Book of Abstracts (pp. 60–61). http://hdl.handle.net/20.500.12708/50855 ( reposiTUm)

Kolm, C., Martzy, R., Brunner, K., Mach, R. L., Krska, R., Heinze, G., Sommer, R., Reischer, G., & Farnleitner, A. H. (2017). A complementary isothermal amplification method to the U.S EPA qPCR approach for the detection of enterococci in environmental waters. In Book of Abstracts (pp. 46–47). http://hdl.handle.net/20.500.12708/50853 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2017). A pleiotropic regulator of the Primary and Secondary Metabolism in Fungi. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/50001 ( reposiTUm)

Martzy, R., Kolm, C., Brunner, K., Mach, R. L., Krska, R., Sinkovec, H., Sommer, R., Farnleitner, A. H., & Reischer, G. (2017). A Loop-Mediated Isothermal Amplification (LAMP) Assay for the Rapid Detection of Enterococcus spp. in Water. In Water Microbiology 2017 (p. 2). http://hdl.handle.net/20.500.12708/49845 ( reposiTUm)

Kolm, C., Martzy, R., Brunner, K., Mach, R. L., Krska, R., Heinze, G., Sommer, R., Reischer, G., & Farnleitner, A. H. (2017). An Isothermal Amplification Method Complementary to US EPA qPCR for the Detection of Enterococci in Environmental Waters. In Water Microbiology 2017 (p. 1). http://hdl.handle.net/20.500.12708/49843 ( reposiTUm)

Linke, R., Zeki, S., Mayer, R., Keiblinger, K., Mach, R. L., Sommer, R., Reischer, G., & Farnleitner, A. H. (2017). Opening Pandora’s box Unmasking the Need for a Continuous Sample Processing Control for PCR Based Fecal Marker Analysis. In Water Microbiology 2017 (p. 1). http://hdl.handle.net/20.500.12708/49844 ( reposiTUm)

Martzy, R., Kolm, C., Brunner, K., Mach, R. L., Krska, R., Sommer, R., Farnleitner, A. H., & Reischer, G. (2016). Using loop-mediated isothermal amplification (LAMP) technique for the rapid detection of Enterococcus spp. 235 rDNA as a marker for faecal pollution in water resources. In Abstracts (pp. 60–61). http://hdl.handle.net/20.500.12708/49308 ( reposiTUm)

Kolm, C., Martzy, R., Brunner, K., Mach, R. L., Krska, R., Sommer, R., Reischer, G., & Farnleitner, A. H. (2016). A novel approach for the molecular detection of enterococci in water for resource-limited settings - via helicase-dependent amplification. In Abstracts (p. 60). http://hdl.handle.net/20.500.12708/49307 ( reposiTUm)

Linke, R., Zeki, S., Mayer, R., Keiblinger, K., Mach, R. L., Reischer, G., & Farnleitner, A. H. (2016). Pitfalls in DNA-based diagnostics in environmental water samples- tools for validation and optimisation of filtration/extraction procedures. In Abstracts (pp. 61–62). http://hdl.handle.net/20.500.12708/49309 ( reposiTUm)

Savio, D. F., Reischer, G., Sinclair, L., Parajka, J. D., Stadler, P., Blaschke, A. P., Mach, R. L., Kirschner, A. K. T., Blöschl, G., Eiler, A., & Farnleitner, A. H. (2016). Evaluating the applicability of metagenemies for the monitaring of microbiological water quality in natural water resources. In Abstracts (pp. 63–64). http://hdl.handle.net/20.500.12708/49312 ( reposiTUm)

Mayer, R., Egle, L., Reischer, G., Mach, R. L., Zessner, M., & Farnleitner, A. H. (2016). Weltweites Auftreten von human-assoziierten genetischen Fäkalmarkern in hohen Konzentrationen in ungereinigtem und mechanisch-biologisch gereinigtem kommunalen Abwasser. In Abstracts (pp. 62–63). http://hdl.handle.net/20.500.12708/49311 ( reposiTUm)

Rassinger, A., Mello de Sousa, T. M., Regnat, K., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2016). Impact of inducer molecules on DNA accessibility in cellulase and xylanase gene expression in Trichoderma reesei. In Abstract Book (p. 370). http://hdl.handle.net/20.500.12708/49338 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., & Mach-Aigner, A. R. (2016). A hitherto unknown hydrolase activator in Trichoderma reesei. In Abstract Book (p. 352). http://hdl.handle.net/20.500.12708/49337 ( reposiTUm)

Kiesenhofer, D., Mach, R. L., & Mach-Aigner, A. R. (2016). GoxA production from wheat straw using an engineered Trichoderma reesei strain. In Abstract Book (p. 403). http://hdl.handle.net/20.500.12708/49339 ( reposiTUm)

Mello de Sousa, T. M., Derntl, C., Gorsche, R., Regnat, K., Jovanovic, B., Marchetti-Deschmann, M., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2016). The transactivator Xyr1 of Trichoderma reesei functions in a nuclear receptorlike way. In Abstract Book (p. 428). http://hdl.handle.net/20.500.12708/49340 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2016). The transcription factor Xpp1 is a repressor of the fungal secondary metabolism. In Abstract Book (p. 546). http://hdl.handle.net/20.500.12708/49341 ( reposiTUm)

Kolm, C., Martzy, R., Brunner, K., Mach, R. L., Krska, R., Sommer, R., Reischer, G., & Farnleitner, A. H. (2016). A novel approach for the molecular detection of faecal enterococci in water via helicasedependent amplification for resource-limited settings. In Abstracts of Lectures and Posters (pp. 79–80). http://hdl.handle.net/20.500.12708/49440 ( reposiTUm)

Martzy, R., Kolm, C., Brunner, K., Mach, R. L., Krska, R., Sommer, R., Farnleitner, A. H., & Reischer, G. (2016). Using loop-mediated isothermal amplification (LAMP) technique for the rapid detection of the Enterococcus spp. 238 rRNA gene as a marker for faecal pollution in water resources. In Abstracts of Lectures and Posters (pp. 82–83). http://hdl.handle.net/20.500.12708/49439 ( reposiTUm)

Savio, D. F., Sinclair, L., Parajka, J. D., Reischer, G., Stadler, P., Blaschke, A. P., Mach, R. L., Kirschner, A. K. T., Blöschl, G., Farnleitner, A. H., & Eiler, A. (2015). Bacterial diversity along a 2,600 km river continuum. In Proceedings (p. 2). http://hdl.handle.net/20.500.12708/49142 ( reposiTUm)

Savio, D. F., Reischer, G., Sinclair, L., Parajka, J. D., Stadler, P., Blaschke, A. P., Mach, R. L., Kirschner, A. K. T., Blöschl, G., Eiler, A., & Farnleitner, A. H. (2015). Meta-genomics for water resources monitoring: Bacterial 16S RRNA gene communities along 2600 km of the Danube river. In Proceedings (pp. 436–437). http://hdl.handle.net/20.500.12708/49072 ( reposiTUm)

Zeki, S., Mayer, R., Keiblinger, K., Schuster, N., Kiesenhofer, D., Mach-Aigner, A. R., Mach, R. L., Reischer, G., & Farnleitner, A. H. (2015). Design and application of a genetically modified E. coli strain for assessment of DNA extraction and recovery efficiencies in Bacteroidetes based MST studies. In Proceedings (pp. 77–79). http://hdl.handle.net/20.500.12708/49106 ( reposiTUm)

Derntl, C., Mello de Sousa, T. M., Kiesenhofer, D., Rassinger, A., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2015). How to modify regulatory proteins for desired gene expression? In Abstract Book (p. 22). http://hdl.handle.net/20.500.12708/48933 ( reposiTUm)

Mayer, R., Egle, L., Reischer, G., Piringer, H., Gaisbauer, M., Mach, R. L., Zessner, M., Sommer, R., & Farnleitner, A. H. (2014). Are genetic faecal markers a valuable tool to monitor sewage associated contamination at water resources? In Abstracts (p. 31). http://hdl.handle.net/20.500.12708/48629 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Savio, D., Mach, R. L., Stadler, P., Kirschner, A. K. T., Stadler, H., Blaschke, A. P., Sommer, R., & Zerobin, W. (2014). Microbial water quality management at all time scales: from molecuar source tracking to near real-time water abstraction at alpine karst water resources. In Abstracts (pp. 30–31). http://hdl.handle.net/20.500.12708/48633 ( reposiTUm)

Vierheilig, J., Reischer, G., Savio, D., Frick, C., Blaschke, A. P., Derx, J., Sommer, R., Mach, R. L., & Farnleitner, A. H. (2014). Bacterial population structure analysis in a complex backwater area by next generation sequencing (NGS) to support the development of faecal pollution detection in the future. In Abstracts (pp. 32–33). http://hdl.handle.net/20.500.12708/48636 ( reposiTUm)

Zahradnik, C., Martzy, R., Mach, R. L., Krska, R., Farnleitner, A. H., & Brunner, K. (2014). A Simple Method for the Detection of Horsemeat in Food. In Book of Abstracts (p. 62). http://hdl.handle.net/20.500.12708/48641 ( reposiTUm)

Gonzalez Garcia, E., Kolm, C., Mach, R. L., Krska, R., & Brunner, K. (2014). A rapid DNA extraction method and its combination with isothermal DNA amplification for the determination of genetically modified maize. In Book of Abstracts (p. 53). http://hdl.handle.net/20.500.12708/48645 ( reposiTUm)

Zahradnik, C., Kolm, C., Martzy, R., Mach, R. L., Farnleitner, A. H., Krska, R., & Brunner, K. (2014). Isothermal DNA amplification approaches for the detection of genetically modofied maize. In Abstracts of Lectures and Posters (p. 96). http://hdl.handle.net/20.500.12708/48647 ( reposiTUm)

Stadler, P., Lendenfeld, T., Ryzinska-Paier, G., Blaschke, A. P., Stadler, H., Mach, R. L., Brunner, K., Appels, J., Zessner, M., & Farnleitner, A. H. (2014). A sensitive and robust method for automated on-line monitoring of enzymatic activities in water and water resources. In Abstracts of Lectures and Posters (p. 97). http://hdl.handle.net/20.500.12708/48648 ( reposiTUm)

Mach, R. L., Mach-Aigner, A. R., Derntl, C., Mello de Sousa, T. M., Rassinger, A., Till, P., & Kiesenhofer, D. (2014). Complex, Multilevel Mechanisms Regulate Expression of Hydrolase Encoding Genes in Trichoderma. In TG2014 Programme & Abstracts (p. 17). http://hdl.handle.net/20.500.12708/48693 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Rassinger, A., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2014). A truncation of Cre1 from T. reesei leads to a different functionality. In TG2014 Programme & Abstracts (p. 23). http://hdl.handle.net/20.500.12708/48694 ( reposiTUm)

Vierheilig, J., Reischer, G., Frick, C., Sommer, R., Blaschke, A. P., Derx, J., Kirschner, A. K. T., Muniesa, M., Mach, R. L., & Farnleitner, A. H. (2014). Comparative analyses of the genetic bacterial population structures in intestinal and non-intestinal habitats using an innovative multi-compartment approach. In Proceedings (pp. 432–433). http://hdl.handle.net/20.500.12708/48820 ( reposiTUm)

Schnitzer, G., Kirschner, A. K. T., Mach, R. L., Farnleitner, A. H., & Reischer, G. (2014). Integration of internal amplification control in quantitative PCR methods for microbial faecal source tracking. In Abstracts (p. 82). http://hdl.handle.net/20.500.12708/48637 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2014). Characterization of a Nuclear Receptor-like Domain of the Xylanase Regulator 1. In Book of Abstracts (p. 198). http://hdl.handle.net/20.500.12708/48638 ( reposiTUm)

Mach-Aigner, A. R., Gorsche, R., Mello de Sousa, T. M., Pocas-Fonseca, M., & Mach, R. L. (2014). What Makes Rut-C30 an Appealing Parent of Industry Strains? In Book of Abstracts (p. 231). http://hdl.handle.net/20.500.12708/48640 ( reposiTUm)

Derntl, C., Ortner, K., Mach, R. L., & Mach-Aigner, A. R. (2014). Identification of Crucial Motifs in the Transcription Factors Ace1 and Xyr1 in Trichoderma reesei. In Book of Abstracts (p. 210). http://hdl.handle.net/20.500.12708/48639 ( reposiTUm)

Preiser, V., Mach, R. L., Krska, R., & Brunner, K. (2013). Development of Aptamers For a Rapid Detection of Aflatoxin in Maize. In Book of Abstracts (p. 353). http://hdl.handle.net/20.500.12708/48471 ( reposiTUm)

Brunner, K., Zahradnik, C., Martzy, R., Krska, R., & Mach, R. L. (2013). Detection of Celery by Isothermal Amplification of DNA. In Book of Abstracts (p. 170). http://hdl.handle.net/20.500.12708/48472 ( reposiTUm)

Gonzalez Garcia, E., Mach, R. L., Krska, R., & Brunner, K. (2013). A Rapid DNA Extraction Method Suitable For On-Site Application. In Book of Abstracts (p. 283). http://hdl.handle.net/20.500.12708/48473 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Sommer, R., Mach, R. L., Ryzinska-Paier, G., Kirschner, A. K. T., Stadler, H., & Zerobin, W. (2013). Microbiological Quality Management of Drinking Water Resources at all Time Scales: from Molecular Microbial Source Tracking to Near-Real-Time Water Abstraction Management. In Delegate Program Booklet. 2#^{nd} Water Research Conference (IWA), Singapore, Non-EU. http://hdl.handle.net/20.500.12708/48475 ( reposiTUm)

Vierheilig, J., Reischer, G., Sommer, R., Frick, C., Blaschke, A. P., Derx, J., Mach, R. L., & Farnleitner, A. H. (2013). Elucidating the genetic population structures of fecal bacteria in intestinal and non-intestinal habitats within a complex backwater system of a large river. In Abstracts - 17#^{th} International Symposium on Health-Related Water Microbiology (p. 3). http://hdl.handle.net/20.500.12708/61235 ( reposiTUm)

Ryzinska-Paier, G., Lendenfeld, T., Correa, K., Stadler, H., Blaschke, A. P., Mach, R. L., & Farnleitner, A. H. (2013). Field testing of a novel concept for automated on-line monitoring of β-D-glucuronidase activity in water resources. In Abstracts - 17#^{th} International Symposium on Health-Related Water Microbiology (p. 2). http://hdl.handle.net/20.500.12708/48425 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Sommer, R., Mach, R. L., Kirschner, A. K. T., Vierheilig, J., Stadler, H., & Zerobin, W. (2013). Microbial Water Quality Management at All Time Scales: From Faecal Source Tracking to Near Real-Time Water Abstraction at Karstic Groundwater Resources. In Abstracts - 17#^{th} International Symposium on Health-Related Water Microbiology (p. 3). http://hdl.handle.net/20.500.12708/48363 ( reposiTUm)

Derntl, C., Gudynaite-Savitch, L., Calixte, S., White, T., Mach-Aigner, A. R., & Mach, R. L. (2013). A point mutation in Xyr1 causes a glucose-blind, inducer independent enzyme production phenotype in Trichoderma reesei. In XI International Fungal Biology Conference (p. 235). http://hdl.handle.net/20.500.12708/48416 ( reposiTUm)

Mello de Sousa, T. M., Rassinger, A., Mach, R. L., & Mach-Aigner, A. R. (2013). Chromatin rearrangement analysis of Xyr1 regulon genes in Trichoderma reesei. In XI International Fungal Biology Conference (p. 237). http://hdl.handle.net/20.500.12708/48417 ( reposiTUm)

Gorsche, R., Mach, R. L., & Mach-Aigner, A. R. (2012). High Throughput in vivo Footprinting - an improved Method to detect Protein-DNA Interactions. In Meeting Abstracts (p. 109). http://hdl.handle.net/20.500.12708/47847 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2012). Complex, multilevel mechanisms regulate expression of hydrolase encoding genes in Trichoderma. In www.furb.br (p. 1). http://hdl.handle.net/20.500.12708/47967 ( reposiTUm)

Gorsche, R., Mello de Sousa, T. M., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2012). Partner search and relationship: how to find regulatory elements and proteins and to monitor their interaction. In www.furb.br (p. 1). http://hdl.handle.net/20.500.12708/47908 ( reposiTUm)

Derntl, C., Steiger, M., Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2012). A novel utilisation of the biopolymer chitin : Generation of a pharmaceutically relevant fine chemical by a whole-cell catalyst approach in Trichoderma. In TG 2012 Programme and Abstracts (p. 39). http://hdl.handle.net/20.500.12708/47960 ( reposiTUm)

Gorsche, R., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2012). Improving in vivo Footprinting - finding a more sensitive way to detect Protein-DNA Interactions. In TG 2012 Programme and Abstracts (p. 81). http://hdl.handle.net/20.500.12708/47957 ( reposiTUm)

Reithner, B., & Mach, R. L. (2012). Trichoderma atroviride xylanase regulator 1 (Xyr1) and its role in mycoparasitism. In TG 2012 Programme and Abstracts (p. 23). http://hdl.handle.net/20.500.12708/47961 ( reposiTUm)

Klaubauf, S., Narang, H. M., Battaglia, E., Kobayashi, T., Brunner, K., Mach-Aigner, A. R., Mach, R. L., & De Vries, R. (2012). Similar Is Not The Same : Differences In The Function Of The (Hemi -) Cellulolytic Regulator XlnR (Xlr1/Xyr1) In Filamentous Fungi. In Meeting Abstracts (p. 122). http://hdl.handle.net/20.500.12708/47848 ( reposiTUm)

Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2012). Regulation of (Hemi-) Cellulases in Trichoderma reesei. In Topcial Issues of Rational Use of Natural Resources Vol. II (pp. 116–117). http://hdl.handle.net/20.500.12708/47851 ( reposiTUm)

Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2011). A High Throughput in vivo Footprinting Technique to detect Protein-DNA Interactions. In Abstract Booklet. 2011 Einsteins in the City, New York, USA, Non-EU. http://hdl.handle.net/20.500.12708/47374 ( reposiTUm)

Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2011). Transcriptional regulation of cellulolytic and hemicellulolytic enzymes in Trichoderma reesei. In Proceedings Probleme der Ausnutzung von Bodenschätzen, Band II (pp. 120–121). http://hdl.handle.net/20.500.12708/47391 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., & Mach, R. L. (2011). From the biopolymer chitin to a highly valuable, pharmaceutically relevant fine chemical : applying an integrated bioprocess technology approach to Trichoderma. In 19#^{th} Annual Meeting of the BioEnvironmental Polymer Society. 19#^{th} Annual Meeting of the BioEnvironmental Polymer Society (BEPS), Wien, Austria. http://hdl.handle.net/20.500.12708/47536 ( reposiTUm)

Brunner, K., Preiser, V., Kovalsky- Paris, M. P., & Mach, R. L. (2011). Quantifizierung von toxinproduzierenden Arten des pflanzenpathogenen Pilzes Fusarium in Getreide und Mais mittels duplex-real -time PCR. In Anakon 2011 - Kurzreferate (p. 270). http://hdl.handle.net/20.500.12708/47558 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., & Mach, R. L. (2010). From chitin to a highly valuable, pharmaceutically relevant fine chemical : inserting a multi-step enzyme cascade into Trichoderma. In Meeting Abstracts (p. 159). http://hdl.handle.net/20.500.12708/46854 ( reposiTUm)

Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2010). Engineering an N-acetylneuraminic acid synthesis pathway into Trichoderma. In Meeting Abstracts (p. 160). http://hdl.handle.net/20.500.12708/46855 ( reposiTUm)

Steiger, M., Vitikainen, M., Brunner, K., Adam, G., Saloheimo, M., Mach, R. L., & Mach-Aigner, A. R. (2010). A transformation system for Hypocrea (Trichoderma) that favours homologous integration and that uses reusable bi-directionally selectable markers. In Book of Abstracts. Trichoderma - Molecular mechanisms and applications of biocontrol in agriculture, Technion, Haifa, Israel, Non-EU. http://hdl.handle.net/20.500.12708/47017 ( reposiTUm)

Mach, R. L., Steiger, M., & Mach-Aigner, A. R. (2010). Engineering an N-acetylneuraminic acid Pathway into Trichoderma spp. : From Chitin to the Zanamivir Precursor N-acetylneuraminic Acid by Whole. In ibio 2010 (p. 205). http://hdl.handle.net/20.500.12708/47015 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M., Gorsche, R., & Mach, R. L. (2010). Deregulating Hydrolase Production in the Industrial Important Fungus Trichoderma Reesei - from Gene Regulation to Strain Improvement. In ibio 2010 (p. 234). http://hdl.handle.net/20.500.12708/47016 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., Gorsche, R., & Mach, R. L. (2010). Synthesis of N-acetyl neuraminic acid from Chitin using Trichoderma as whole-cell catalyst. In Book of Abstracts (p. 48). http://hdl.handle.net/20.500.12708/46858 ( reposiTUm)

Mach, R. L., Pucher, M., & Mach-Aigner, A. R. (2010). New generation of strain improvement for hydrolase production via genetic engineering : a case study Trichoderma. In Book of Abstracts (p. 22). http://hdl.handle.net/20.500.12708/46857 ( reposiTUm)

Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2010). D-xylose : repressor or inducer of xylanase expression in Hypocrea jecorina (Trichoderma reesei). In Meeting Abstracts (p. 74). http://hdl.handle.net/20.500.12708/46856 ( reposiTUm)

Ryzinska-Paier, G., Sommer, R., Reischer, G., Burtscher, M. M., Mach, R. L., Knetsch, S., & Farnleitner, A. H. (2010). Evaluating the sensitivity of standard faecal indicator bacteria (SFIB) for water resource monitoring in human and animal faecal excreta at alpine catchments. In ÖGHMP 2010 Abstracts (pp. 117–118). http://hdl.handle.net/20.500.12708/46958 ( reposiTUm)

Ryzinska-Paier, G., Haider, J., Knetsch, S., Stadler, H., Reischer, G., Kirschner, A. K. T., Mach, R. L., Sommer, R., & Farnleitner, A. H. (2010). Investigating the potential of Clostridium perfringens as a conservative faecal marker in alpine water resources. In ÖGHMP 2010 Abstracts (pp. 30–31). http://hdl.handle.net/20.500.12708/46910 ( reposiTUm)

Brunner, K., Preiser, V., Farnleitner, A. H., & Mach, R. L. (2010). Neueste Entwicklungen in der Resistenzbestimmung von Getreide und Mais : Nachweis der DNA als Schlüssel zur präzisen Messung von Fusarium-Befall. In Tagungsband (pp. 131–133). http://hdl.handle.net/20.500.12708/47392 ( reposiTUm)

Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2010). Improvement of cultivation conditions for high enzyme production in the industrially important fungus Trichoderma reesei. In Proceedings (pp. 383–384). http://hdl.handle.net/20.500.12708/46786 ( reposiTUm)

Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2010). Reference genes for Hypocrea jecorina. In Proceedings (pp. 415–416). http://hdl.handle.net/20.500.12708/46787 ( reposiTUm)

Stadler, H., Klock, E., Skritek, P., Mach, R. L., Zerobin, W., & Farnleitner, A. H. (2009). Real-time Characterization of Microbial Faecal Pollution Dynamics at Alpine Karstic Water Resources. In 15th Health Related Water Microbiology Symposium (pp. 276–278). http://hdl.handle.net/20.500.12708/46505 ( reposiTUm)

Mushi, D., Mach, R. L., Byamukama, D., & Farnleitner, A. H. (2009). An integral approach in estimating the risk of contamination associated with unprotected groundwater in peri-urban area of tropical developing country. In 15th Health Related Water Microbiology Symposium (pp. 57–58). http://hdl.handle.net/20.500.12708/46502 ( reposiTUm)

Ryzinska-Paier, G., Sommer, R., Reischer, G., Rudnicki, S., Burtscher, M. M., Mach, R. L., Knetsch, S., & Farnleitner, A. H. (2009). Presence of Escherichia coli, Enterococci and Clostridium perfringens in human-, livestock- and wildlife faecal pollution sources at alpine / mountainous catchments: basic implications for sound water quality monitoring. In 15th Health Related Water Microbiology Symposium (pp. 267–269). http://hdl.handle.net/20.500.12708/46504 ( reposiTUm)

Kirschner, A. K. T., Kavka, G. G., Mach, R. L., Sommer, R., & Farnleitner, A. H. (2009). Microbiological water quality along the Danube River : Integrating data from two whole-river surveys and a transnational monitoring network. In 15th Health Related Water Microbiology Symposium (pp. 220–222). http://hdl.handle.net/20.500.12708/46503 ( reposiTUm)

Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2009). Towards hydrolase production on pentose sugars : the xylose dependent interplay of the two key opponents Xyr1 and Cre1 in Trichoderma reesei. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46613 ( reposiTUm)

Farnleitner, A. H., Haider, J., Ryzinska-Paier, G., Knetsch, S., Stadler, H., Reischer, G., Kirschner, A. K. T., Mach, R. L., & Sommer, R. (2009). Clostridium perfringens as a faecal indicator: a polyphasic evaluation by standard- and molecular methods for a large Austrian catchment. In 15th Health Related Water Microbiology Symposium (pp. 101–103). http://hdl.handle.net/20.500.12708/46498 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., & Mach, R. L. (2009). From the biopolymer chitin to a highly valuable, pharmaceutically relevant fine chemical : Applying an integrated bioprocess technology approach to Trichoderma. In The Third Annual Workshop of COST FP0620 - Abstract Book (p. 54). http://hdl.handle.net/20.500.12708/46619 ( reposiTUm)

Mach, R. L., Steiger, M., & Mach-Aigner, A. R. (2009). Heterologous expression of the GlcNAc 2-epimerase and neuNAc-synthase in Trichoderma to construct a N-Acetylneuraminic acid synthesis pathway. In The Third Annual Workshop of COST FP0620 - Abstract Book (p. 40). http://hdl.handle.net/20.500.12708/46620 ( reposiTUm)

Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2009). Defining the norm : reference genes for RT-qPCR in Trichoderma. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46621 ( reposiTUm)

Marchetti-Deschmann, M., Winkler, W., Kemptner, J., Raptakis, E., Druzhinina, I., Mach, R. L., Kubicek, C. P., & Allmaier, G. (2009). Classification of mycotoxin-producing Fusarium species based on MALDI-TOF MS analyses of their intact spores. In Proceedings of the 57th ASMS conference on mass spectrometry and allied topics (p. 3). http://hdl.handle.net/20.500.12708/46702 ( reposiTUm)

Brunner, K., Kovalsky- Paris, M. P., Paolino, G., Bürstmayr, H., Lemmens, M., Berthiller, F., Schuhmacher, R., Krska, R., & Mach, R. L. (2009). Eine quantitativen PCR Methode zur Fusarium Resistenzbestimmung. In ALVA Mitteilungen 7 (pp. 35–40). ALVA Mitteilungen. http://hdl.handle.net/20.500.12708/46567 ( reposiTUm)

Brunner, K., Kovalsky- Paris, M. P., Paolino, G., Bürstmayr, H., Lemmens, M., Berthiller, F., Schuhmacher, R., Krska, R., & Mach, R. L. (2009). Die Entwicklung einer quantitativen PCR Methode zur Beurteilung der Fusarium-Resistenz von Weizen. In Tagungsband 59.Tagung der Pflanzenzüchter und Saatgutkaufleute Österreichs (pp. 27–30). Lehr- und Forschungszentrum für Landwirtschaft Raumberg-Gumpenstein. http://hdl.handle.net/20.500.12708/46568 ( reposiTUm)

Pucher, M., Bauer, G., Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2008). Investigations of Xyr1 (Xylanase regulator 1), the main transcriptional regulator of the xylanaolytic and cellulolytic enzymes in Hypocrea jecorina (Trichoderma reesei). In Enzymatic fiber modification and hydrolysis (p. 38). http://hdl.handle.net/20.500.12708/46508 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M., Steiger, M., & Mach, R. L. (2008). Xyr1 is a major target to genetically engineer the Hydrolase Profile of Trichoderma reesei. In ENZITEC 2008 - VIII Seminario Brasileiro de Tecnologia Enzimatica (p. 21). http://hdl.handle.net/20.500.12708/46275 ( reposiTUm)

Stricker, A. R., Steiger, M., Pucher, M., & Mach, R. L. (2008). Modified hydrolase profiles in Hypocrea jecorina by changing the expression of the general activator protein Xylanase regulator 1 (Xyr1). In 9#^{th} European Conference on Fungal Genetics - Meeting Abstracts (p. 183). http://hdl.handle.net/20.500.12708/46272 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M., Steiger, M., & Mach, R. L. (2008). From Gene Regulation to Strain Improvement - lessons from the Industrial Important Fungus Trichoderma reesei. In ENZITEC 2008 - VIII Seminario Brasileiro de Tecnologia Enzimatica (p. 20). http://hdl.handle.net/20.500.12708/46274 ( reposiTUm)

Pucher, M., Pocas-Fonseca, M., Mach, R. L., & Stricker, A. R. (2008). Identification and isolation of the xylanase repressor protein (Xrp1) of Hypocrea jecorina (Trichoderma reesei). In 9#^{th} European Conference on Fungal Genetics - Meeting Abstracts (p. 159). http://hdl.handle.net/20.500.12708/46273 ( reposiTUm)

Stricker, A. R., & Mach, R. L. (2008). Transcriptional regulation of hydrolase expression : lessons from the industrially important fungus Trichoderma reesei. In 9#^{th} European Conference on Fungal Genetics - Meeting Abstracts (p. 31). http://hdl.handle.net/20.500.12708/46270 ( reposiTUm)

Reischer, G., Haider, J., Kirschner, A. K. T., Sommer, R., Mach, R. L., & Farnleitner, A. H. (2008). Quantitative PCR Methoden zum spezifischen Nachweis fäkaler Verunreinigungen durch den Menschen und durch Wiederkäuer in Wasserressourcen. In 31.Jahrestagung der Österreichischen Gesellschaft für Hygiene, Mikrobiologie und Präventivmedizin (pp. 59–60). http://hdl.handle.net/20.500.12708/46281 ( reposiTUm)

Farnleitner, A. H., Stadler, H., Reischer, G., Sommer, R., Kirschner, A. K. T., Burtscher, M. M., Ryzinska, G., Wilhartitz, I., Kuschnig, G., Mach, R. L., & Zerobin, W. (2008). Methods and Strategies for Alpine Karstic Water Resource Management: Opening Pollution Microbiology’s “Black Box.” In World Water Congress and Exhibition (pp. 169–171). International Water Association. http://hdl.handle.net/20.500.12708/46292 ( reposiTUm)

Wilhartitz, I., Kirschner, A. K. T., Stadler, H., Szewzyk, U., Herndl, G., Mach, R. L., & Farnleitner, A. H. (2008). Ecological Significance and Applied Aspects of Microbial Endokarst Communities in Alpine Karstic Groundwater Resources. In World Water Congress and Exhibition (pp. 24–26). International Water Association. http://hdl.handle.net/20.500.12708/46293 ( reposiTUm)

Wilhartitz, I., Kirschner, A. K. T., Stadler, H., Herndl, G., Szewzyk, U., Mach, R. L., & Farnleitner, A. H. (2008). Ecological Significance of Microbial Endokarst Communities in Groundwater from Alpine Karst Aquifers. In ISME 12. ISME 12 - 12th International Symposium on Microbial Ecology, Cairns, Australien, Non-EU. http://hdl.handle.net/20.500.12708/46291 ( reposiTUm)

Steiger, M., Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2008). Learning more about the Gene Regulation of Hydrolytic enzyme - encoding Genes in an industrial relevant Fungus. In Enzymatic fiber modification and hydrolysis (p. 37). http://hdl.handle.net/20.500.12708/46509 ( reposiTUm)

Steiger, M., Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2008). Learning more about the Gene Regulation of Hydrolytic enzyme - encoding Genes in an industrial relevant Fungus. In Junior Scientist Conference 2008 - Proceedings (pp. 159–160). http://hdl.handle.net/20.500.12708/46276 ( reposiTUm)

Pucher, M., Bauer, G., Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2008). Investigations of Xyr1 (Xylanase regulator 1), the main transcriptional regulator of the xylanaolytic and cellulolytic enzymes in Hypocrea jecorina (Trichoderma reesei). In Junior Scientist Conference 2008 - Proceedings (pp. 161–162). http://hdl.handle.net/20.500.12708/46277 ( reposiTUm)

Reischer, G., Haider, J., Keiblinger, K., Sommer, R., Stadler, H., Mach, R. L., & Farnleitner, A. H. (2008). Tracking the Source of Faecal Pollution in Water : Quantitative Microbial Source Tracking of Genetic Markers from Human and Ruminant Origin. In World Water Congress and Exhibition (pp. 247–248). International Water Association. http://hdl.handle.net/20.500.12708/46283 ( reposiTUm)

Lendenfeld, T., Mach, R. L., & Farnleitner, A. H. (2008). Basic Considerations for the Development of an Online- Measurement Device for Faecal Pollution Monitoring in Water. In World Water Congress and Exhibition (p. 40). International Water Association. http://hdl.handle.net/20.500.12708/46284 ( reposiTUm)

Reischer, G., Kirschner, A. K. T., Velimirov, B., Kavka, G. G., Mach, R. L., & Farnleitner, A. H. (2008). Faecal Polution Monitoring and DNA Based Quantitative Microbial Source Tracking (QMST) On A Large Scale In The Danube River Catchment Area. In World Water Congress and Exhibition (pp. 14–16). International Water Association. http://hdl.handle.net/20.500.12708/46294 ( reposiTUm)

Stadler, H., Skritek, P., Mach, R. L., Zerobin, W., & Farnleitner, A. H. (2008). Elucidating Faecal Indicator Dynamics in Alpine Karstic Spring Water at a High Resolution Scale: LEO - Satellite Based Automatic Event Sampling and E.coli Field Analysis. In World Water Congress and Exhibition (p. 40). International Water Association. http://hdl.handle.net/20.500.12708/46295 ( reposiTUm)

Reischer, G., Kasper, D., Steinborn, R., Mach, R. L., & Farnleitner, A. H. (2007). Tracing the source of faecal pollution in water by qPCR: quantitative microbial source tracking (QMST). In Proceedings qPCR 2007 Event (p. 33). http://hdl.handle.net/20.500.12708/45982 ( reposiTUm)

Mushi, D., Kivaisi, A., Mach, R. L., Byamukama, D., & Farnleitner, A. H. (2007). Sources of sorbitol-fermenting Bifidobacteria and their incidence and survival in streams and ground water habitats in urban tropical lowland of Dar es Salaam,Tanzania. In WaterMicro 2007 (pp. 22–24). http://hdl.handle.net/20.500.12708/45980 ( reposiTUm)

Reischer, G., Kasper, D., Haider, J., Sommer, R., Mach, R. L., & Farnleitner, A. H. (2007). DNA-based human- and ruminant-specific quantitative microbial source tracking (QMST) in a karstic spring catchment area: development and application. In WaterMicro 2007 (pp. 26–27). http://hdl.handle.net/20.500.12708/45981 ( reposiTUm)

Farnleitner, A. H., Stadler, H., Haider, J., Sommer, R., Kirschner, A. K. T., Ryzinska, G., Reischer, G., Burtscher, M. M., Keiblinger, K., Fischer, U. R., Wieltschnig, C., & Mach, R. L. (2007). Establishing the basic links between hydrological conditions and microbial quality parameters in alpine karstic spring water under increased discharge. In WaterMicro 2007 (pp. 216–218). http://hdl.handle.net/20.500.12708/45984 ( reposiTUm)

Stadler, H., Skritek, P., Mach, R. L., & Farnleitner, A. H. (2007). Microbiological Monitoring and Automated Event Sampling at Karst Springs using Leo-Satellites. In WaterMicro 2007 (pp. 270–271). http://hdl.handle.net/20.500.12708/45985 ( reposiTUm)

Hirschmann, J., Marchetti, M., Mach, R. L., Belgacem, O., Raptakis, E., Kubicek, C. P., & Allmaier, G. (2007). Comparison of different sample preparation techniques for differentiation of mycotoxin-producing Fusarium species by MALDI-TOF/RTOF mass spectrometry. In Proceedings of the 55th ASMS Conference. 55th Annual Conference of the American Society of Mass Spectrometry, Inndianapolis, USA, Non-EU. http://hdl.handle.net/20.500.12708/45966 ( reposiTUm)

Mach, R. L., Stricker, A. R., Rauscher, R., Würleitner, E., & Trefflinger, P. (2007). Differential regulation of xylanase gene expression in Hypocrea jecorina is due to the interplay of the general activator Xyr1 and the fine tuning transcription factors Ace1 and Ace2. In Fungal Genetics Newsletter (p. 114). http://hdl.handle.net/20.500.12708/45987 ( reposiTUm)

Stricker, A. R., Trefflinger, P., Aro, N., Penttila, M. E., & Mach, R. L. (2007). Involvement of Ace2(Activator of Cellulases 2) in the architecture of the yxn2 transcriptosome of Hypocrea jecorina. In Fungal Genetics Newsletter (p. 114). http://hdl.handle.net/20.500.12708/45986 ( reposiTUm)

Reischer, G., Mach, R. L., Kasper, D., Winter, C., Kavka, G. G., & Farnleitner, A. H. (2006). Testing the applicability of DNA based microbial faecal source tracking methods on a large scale in the River Danube and its important tributaries. In Proceedings 36th International Conference of IAD (pp. 332–337). Austrian Committee Danube Research / IAD, Vienna. http://hdl.handle.net/20.500.12708/176127 ( reposiTUm)

Farnleitner, A. H., Winter, C., Hein, T., Mach, R. L., & Kavka, G. G. (2006). Longitudinal Changes in the Bacterial Community of the Danube: A Whole River Approach. In Proceedings 36th International Conference of IAD (pp. 326–331). Austrian Committee Danube Research / IAD, Vienna. http://hdl.handle.net/20.500.12708/176128 ( reposiTUm)

Ciliento, R., Woo, S. L., Brunner, K., Marra, R., Vinale, F., Ferraioli, S., Ambrosino, P., Soriente, I., Ruocco, M., Turra, D., Lanzuise, S., Gigante, S., Mach, R. L., Zeilinger, S., & Lorito, M. (2006). Genetic improvement of Trichoderma harzianum strain T22 using an inducible promoter and the Aspergillus niger goxA gene. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/47244 ( reposiTUm)

Zembek, P. B., Brunner, K., Reithner, B., Palamarczyk, G., Zeilinger, S., Mach, R. L., & Kruszewska, J. S. (2006). Improvement of biocontrol properties of T.atroviride P1 strain by increased glycosylation abilities. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/47243 ( reposiTUm)

Wilhartitz, I., Mach, R. L., Ryzinska, G., Kirschner, A. K. T., Stadler, H., Herndl, G., Szewzyk, U., & Farnleitner, A. H. (2006). Biogeochemial significance of stable autochthonous microbial endokarst communities in spring water and alpine karst aquifers. In Book of Abstracts (p. 40). http://hdl.handle.net/20.500.12708/45662 ( reposiTUm)

Wilhartitz, I., Mach, R. L., Ryzinska, G., Kirschner, A. K. T., Stadler, H., & Farnleitner, A. H. (2006). Stable autochthonous microbial endokarst communities in spring water of two different alpine karst aquifers. In Proc. of Symposium of the European Geoscience Union; General Assembly. Symposium of the European Geoscience Union; General Assembly, Wien, Austria. http://hdl.handle.net/20.500.12708/45663 ( reposiTUm)

Zembek, P. B., Brunner, K., Reithner, B., Palamarczyk, G., Zeilinger, S., Mach, R. L., & Kruszewska, J. S. (2006). Metabolic engineering of glycosylation pathway affects biocontrol properties of Trichoderma atroviride. In Book of Abstracts (p. 310). http://hdl.handle.net/20.500.12708/45665 ( reposiTUm)

Stadler, H., Skritek, P., Mach, R. L., & Farnleitner, A. H. (2006). Event sampling and monitoring for microbiological investigations at karstic springs by networking via leo-satellites. In Proc.of International Conference: All about Karst & Water. International Conference: All about Karst & Water Vienna 2006, Wien, Austria. http://hdl.handle.net/20.500.12708/45664 ( reposiTUm)

Brunner, K., Lemmens, M., Kaspar, D., Köllner, Krista. E., Adam, G., & Mach, R. L. (2006). Reduced virulence of a glucose oxidase producing strain of Fusarium graminearum on wheat. In Book of Abstracts (p. 308). http://hdl.handle.net/20.500.12708/45455 ( reposiTUm)

Wilhartitz, I., Mach, R. L., Herndl, G., & Farnleitner, A. H. (2006). Etablierung einer neuen sensitiven “in situ” Methode zur Bestimmung der Bakterienpopulation in Trinkwasser am Beispiel von europäischen Mineralwässern. In Book of Abstracts (p. 82). http://hdl.handle.net/20.500.12708/45584 ( reposiTUm)

Farnleitner, A. H., Wilhartitz, I., Burtscher, M. M., Reischer, G., Ryzinska, G., Sommer, R., Kirschner, A. K. T., Stadler, H., Swezyk, U., & Mach, R. L. (2006). Microbiology of alpine karst aquifer springs - current view and future perspectives. In Proc.of International Conference: All about Karst & Water. International Conference: All about Karst & Water Vienna 2006, Wien, Austria. http://hdl.handle.net/20.500.12708/45654 ( reposiTUm)

Reischer, G., Kasper, D., Mach, R. L., & Farnleitner, A. H. (2006). Zwei real-time PCR Methoden für den Nachweis von genetischen Fäkalmarkern zur Differenzierung und Quantifizierung von fäkalem Eintrag durch den Menschen und durch Wiederkäuer. In Abstracts (pp. 54–55). http://hdl.handle.net/20.500.12708/45655 ( reposiTUm)

Stoppacher, N., Reithner, B., Zeilinger, S., Brunner, K., Mach, R. L., Krska, R., & Schuhmacher, R. (2006). Screening for Atroviridins, Neoatroviridins and Harzianins in Culture Samples of Trichoderma atroviride using LC-MS/MS. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/47242 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., Bauer, G., & Mach, R. L. (2006). The key player of the hydrolytic enzyme system in Trichoderma reesei - regulation of and by Xyr1. In Book of Abstracts (p. 50). http://hdl.handle.net/20.500.12708/45661 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., & Mach, R. L. (2006). The cellulolytic and xylanolytic enzyme system of Trichoderma reesei is governed by Xyr1. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45660 ( reposiTUm)

Farnleitner, A. H., Kavka, G. G., Blaschke, A. P., Strelec, H., Kirnbauer, R., Zessner, M., Schilling, C., Hassler, C., Tentschert, E.-H., Mach, R. L., & Kroiss, H. (2006). Ausmaß der Beeinträchtigung von Grundwasser als Trinkwassertresource durch Versickerung von biologisch gereinigtem häuslichem Abwasser anhand mikrobiologischer Risikoabschhätzung und Transportmodellierung. In Abstracts der 30. Jahrestagung der Österreichischen Gesellschaft für Hygiene, Mikrobiologie und Präventivmedizin (p. 52). http://hdl.handle.net/20.500.12708/45658 ( reposiTUm)

Burtscher, M. M., Köllner, Krista. E., Mach, R. L., Sommer, R., & Farnleitner, A. H. (2005). Development of a reproducible and sensitive amplified fragment length polymorphism (AFLP) finger-printing method on Enterococcus spp for source tracking applications in an alpine watershed. In Water Micro 05 (pp. 30–31). http://hdl.handle.net/20.500.12708/45240 ( reposiTUm)

Wilhartitz, I., Mach, R. L., Ryzinska, G., Kirschner, A. K. T., Stadler, H., Burtscher, M. M., Herndl, G., & Farnleitner, A. H. (2005). Evidence of stable autochthonous microbial endokarst communities in spring water of two alpine karst aquifers differing in hydrogeology. In General Assembly. European Geosciences Union General Assembly, Vienna, Austria, Austria. http://hdl.handle.net/20.500.12708/45239 ( reposiTUm)

Wilhartitz, I., Mach, R. L., Ryzinska, G., Kirschner, A. K. T., Stadler, H., Herndl, G., & Farnleitner, A. H. (2005). Evidence of Stable Autochthonous Microbial Endokarst Communities in Spring Water of two Different Alpine Karst Aquifers. In SAME 9 (p. 62). http://hdl.handle.net/20.500.12708/45235 ( reposiTUm)

Reischer, G., Kasper, D., Farnleitner, A. H., & Mach, R. L. (2005). A new real-time PCR method detecting Bacteroides 16S rDNA markers for the differentiation of human and ruminant faecal sorces in an alpine catchment area. In Water Micro 05 (pp. 31–32). http://hdl.handle.net/20.500.12708/45236 ( reposiTUm)

Byamukama, D., Farnleitner, A. H., Kansiime, F., Manafi, M., Burtscher, M. M., & Mach, R. L. (2005). Contrasting occurrence of Chromobacterium violaceum in tropical drinking water springs in Uganda. In Water Micro 05 (pp. 13–14). http://hdl.handle.net/20.500.12708/45237 ( reposiTUm)

Farnleitner, A. H., Mach, R. L., Burtscher, M. M., Reischer, G., Ryzinska, G., Keiblinger, K., Rudnicki, S., Knetsch, S., & Sommer, R. (2005). Back to the roots" - incidence and abundance of faecal indicators in faeces and sewage of potential pollution sources in an alpine karstic catchment area. In Water Micro 05 (pp. 19–21). http://hdl.handle.net/20.500.12708/45232 ( reposiTUm)

Müller, N., Hornek, R., Kirschner, N., Farnleitner, A. H., Mach, R. L., & Pommerening-Röser, A. (2005). Novel vibrio-shaped ammonia oxidizers from an eutrophic environment. In Tagungsband zur 2. Gemeinsamen Kongress der DGHM und VAAM (p. 97 (MÖP027)). http://hdl.handle.net/20.500.12708/59023 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., & Mach, R. L. (2005). Xyr1 is the main regulator of the xylanolytic and cellolytic enzyme system in Trichoderma reesei. In Molecular Biology of Fungi (p. 43). http://hdl.handle.net/20.500.12708/45234 ( reposiTUm)

Mueller, N., Hornek, R., Kirschner, A. K. T., Farnleitner, A. H., Mach, R. L., & Pommerening-Röser, A. (2005). Novel vibrio-shaped ammonia oxidizers from eutropic environment. In Biospektrum (p. 97). http://hdl.handle.net/20.500.12708/45238 ( reposiTUm)

Mach, R. L. (2004). Ein transgener Pilz als Ersatz für chemische Fungizide. In Mold Meeting. Mold Meeting, Gars am Kamp, Austria. http://hdl.handle.net/20.500.12708/45084 ( reposiTUm)

Schmoll, M., Zeilinger, S., Mach, R. L., & Kubicek, C. P. (2002). A Rapid Subtraction Hybridization protocol (RaSH) for identification of genes whose expression is impaired in the cellulase negative mutant strain Hypocrea jecorina QM9978. In Joint Annual Meeting of the ÖGBM,ÖGGGT,ÖGBT,ANGT (p. 65). http://hdl.handle.net/20.500.12708/47253 ( reposiTUm)

Schmoll, M., Zeilinger, S., Mach, R. L., & Kubicek, C. P. (2002). A rapid substraction hybridization protocol (RaSH) for identification of genes whose expression is impaired in the cellulase-neagative mutant strain Hypocrea jecorina QM 9978. In Proceedings of the 6#^{th} European Conference on fungal genetics (p. 214). http://hdl.handle.net/20.500.12708/45072 ( reposiTUm)

Gupta, V. K., Mach, R. L., & Sreenivasaprasad, S. (2019). Preface. In Fungal Biomolecules - Sources, Applications and Recent Developments (p. xvii). Wiley - Blackwell. http://hdl.handle.net/20.500.12708/30013 ( reposiTUm)

Linke, R., Stadler, P., Reischer, G. H., Savio, D., Kollanur, D., Mayer, R., Mach, R. L., Kirschner, A. K. T., Sommer, R., Derx, J., Stadler, H., & Farnleitner, A. (2019). Using genetic microbial source tracking (MST) markers to identify fecal pollution sources in spring water of a large alpine karst catchment. In J. Rose & B. Jiménez-Cisneros (Eds.), Water and Sanitation for the 21st Century: Health and Microbiological Aspects of Excreta and Wastewater Management (Global Water Pathogen Project). Unesco. https://doi.org/10.14321/waterpathogens.82 ( reposiTUm)

Kiesenhofer, D., Mach-Aigner, A. R., & Mach, R. L. (2016). Understanding the Mechanism of Carbon Catabolite Repression to Increase Protein Production in Filamentous Fungi. In M. Schmoll & C. Dattenböck (Eds.), Gene Expression Systems in Fungi: Advancements and Applications (pp. 275–288). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-27951-0_12 ( reposiTUm)

Kiesenhofer, D., Mach-Aigner, A. R., & Mach, R. L. (2015). Fungal Metabolic Engineering for Biofuel Production. In R. Nascimento Silva (Ed.), Mycology: Current and Future Developments (pp. 128–147). Bentham Science Publishers. https://doi.org/10.2174/9781681080741115010008 ( reposiTUm)

Mello de Sousa, T. M., Mach, R. L., & Mach-Aigner, A. R. (2015). A Recyclable and Bidirectionally Selectable Marker System for Transformation of Trichoderma. In M. A. van den Berg & K. Maruthachalam (Eds.), Genetic Transformation Systems in Fungi, Volume 2 (pp. 169–174). Springer International Publishing. https://doi.org/10.1007/978-3-319-10503-1_14 ( reposiTUm)

Kirschner, A., Kavka, G., Reischer, G., Sommer, R., Blaschke, A. P., Stevenson, M., Vierheilig, J., Mach, R. L., & Farnleitner, A. H. (2015). Microbiological Water Quality of the Danube River: Status Quo and Future Perspectives. In The Handbook of Environmental Chemistry - The Danube River Basin (pp. 439–468). Springer. http://hdl.handle.net/20.500.12708/28906 ( reposiTUm)

Reischer, G., Kirschner, A. K. T., Schnitzer, G., Savio, D. F., Mach, R. L., Bahlmann, A., Schulze, T., Brack, W., & Farnleitner, A. H. (2015). Microbial Faecal Source Tracking. In Joint Danube Survey 3 - A Comprehensive Analysis of Danube Water Quality (pp. 162–168). ICPDR-International Commission for the Protection of the Danube River. http://hdl.handle.net/20.500.12708/28742 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Savio, D., Frick, C., Schuster, N., Schilling, K., Mach, R. L., Derx, J., Kirschner, A. K. T., Blaschke, A. P., & Sommer, R. (2014). Diagnostik mikrobiologischer Fäkalkontaminationen in Wasser und Gewässern - Status Quo und gegenwärtige Entwicklungen. In J. Krampe (Ed.), Abwasserreinigung - Werte erhalten, Effizienz steigern und Ressourcen schonen : ÖWAV-Seminar Wien 2014, TU Wien, 25. - 26. Februar 2014 (Vol. 230, pp. 157–184). Institut für Wassergüte/ TU Wien. http://hdl.handle.net/20.500.12708/28307 ( reposiTUm)

Reithner, B., & Mach, R. L. (2014). Genes from Trichoderma as a Source for Improving Plant Resistance to Fungal Pathogen. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 505–513). Elsevier B.V. http://hdl.handle.net/20.500.12708/28574 ( reposiTUm)

Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2014). Trichoderma Proteins with Disruption Activity on Cellulosic Substrates. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 309–317). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00021-7 ( reposiTUm)

Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2013). Trichoderma as Cell Factories. In Trichoderma Biology and Applications (pp. 280–291). CABI. http://hdl.handle.net/20.500.12708/27947 ( reposiTUm)

Brunner, K., Farnleitner, A. H., & Mach, R. L. (2012). Novel Methods for the Quantification of Pathogenic Fungi in Crop Plants : Quantitative PCR and ELISA Accurately Determine Fusarium Biomass. In Plant Pathology (pp. 203–218). In Tech Rijeka, Croatia. http://hdl.handle.net/20.500.12708/27679 ( reposiTUm)

Stricker, A. R., & Mach, R. L. (2009). Gene Regulation of Hydrolase Expression: Lessons from the Industrially Important Fungus Trichoderma reesei (Hypocrea jecorina). In Current Advances in Molecular Mycology (pp. 205–222). Nova Science Publishers, Inc. http://hdl.handle.net/20.500.12708/26249 ( reposiTUm)

Brunner, K., Zeilinger, S., Reithner, B., Omann, M., & Mach, R. L. (2009). Trichoderma as Biocontrol Agent: Potentials and Limitations of Strain Improvement. In Agriculturally Important Microorganisms (pp. 153–164). Academic World International. http://hdl.handle.net/20.500.12708/26268 ( reposiTUm)

Kirschner, A. K. T., Kavka, G. G., Velimirov, B., Reischer, G., Mach, R. L., & Farnleitner, A. H. (2008). Microbiological water quality and DNA-based quantitative microbial source tracking. In IKSD short form report on JDS2 (pp. 86–95). ICPDR-International Commission for the Protection of the Danube River. http://hdl.handle.net/20.500.12708/26225 ( reposiTUm)

Kavka, G. G., Kirschner, A. K. T., Velimirov, B., Reischer, G., Haider, J., Mach, R. L., & Farnleitner, A. H. (2008). Mikrobiologische Wassergüte der Donau unter Einbeziehung einer DNA-basierenden Methode zur Herkunftbestimmung fäkaler Verunreinigungen. In Das Leben im Donaustrom (pp. 7–23). Bundesamt für Wasserwirtschaft. http://hdl.handle.net/20.500.12708/26228 ( reposiTUm)

Farnleitner, A. H., Mach, R. L., Reischer, G., & Kavka, G. G. (2007). Mikrobiologisch - hygienische Risiken trotz Abwasserentsorgung nach dem Stand der Technik? In Wiener Mitteilingen (pp. 209–242). Institut für Wassergüte/ TU Wien. http://hdl.handle.net/20.500.12708/25320 ( reposiTUm)

Brunner, K., Kasper, D., Köllner, Krista. E., Lemmens, M., Adam, G., & Mach, R. L. (2007). Reduzierte Virulenz eines Glucoseoxidase produzierenden Fusarium graminearum Stammes. In ALVA - Mitteilungen (pp. 44–49). Springer-Verlag. http://hdl.handle.net/20.500.12708/25322 ( reposiTUm)

Brunner, K., Zeilinger, S., & Mach, R. L. (2007). Molecular Approaches for Studying Fungi in the Environment. In Environmental and Microbial Relationships,2nd Edition The Mycota (pp. 18–27). Springer-Verlag. http://hdl.handle.net/20.500.12708/25321 ( reposiTUm)

Farnleitner, A. H., Wilhartitz, I., Burtscher, M. M., Reischer, G., Ryzinska, G., Sommer, R., Kirschner, A. K. T., Stadler, H., Swezyk, U., & Mach, R. L. (2006). Microbiology of alpine karst aquifer springs - current view and future perspectives. In All about karst an water: decision making in a sensitive environment (pp. 183–188). European Regional Development Funds (ERDF). http://hdl.handle.net/20.500.12708/25304 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Winter, C., Hein, T., Mach, R. L., & Kavka, G. G. (2006). Progress in aquatic microbiology: introducing molecular biological approaches on a whole River Danube scale from Germany to the Black Sea. In Danube News (pp. 8–12). International Association of the Danube Research. http://hdl.handle.net/20.500.12708/25305 ( reposiTUm)

Gupta, V. K., Mach, R. L., & Sreenivasaprasad, S. (2019). Fungal Biomolecules - Sources, Applications and Recent Developments. Wiley - Blackwell. http://hdl.handle.net/20.500.12708/24581 ( reposiTUm)

Gherbawy, Y., Mach, R. L., & Rai, M. (Eds.). (2009). Current Advances in Molecular Mycology. Nova Science Publishers, Inc. http://hdl.handle.net/20.500.12708/22841 ( reposiTUm)

Fritsche, S., Fronek, F., Mach, R., & Steiger, M. (2024, September 17). Applicability of non-invasive and live-cell holotomographic imaging on fungi [Poster Presentation]. ÖGMBT Annual Meeting 2024, Graz, Austria. https://doi.org/10.34726/8502 ( reposiTUm)

Burger, I., Schmal, M., Fourtis, L., Peikert, K., Suster, C., Stanetty, C., Schnalzer, D., Birner-Grünberger, R., Mach, R., Mach-Aigner, A., Derntl, C., & Schittmayer-Schantl, M. (2024, September 23). Discovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei [Conference Presentation]. APMRS/CEEPC APMRS-CEEPC 2024, Wien, Austria. http://hdl.handle.net/20.500.12708/207567 ( reposiTUm)

Schneckenleitner, N., Mach, R., Mach-Aigner, A., & Zimmermann, C. (2023, September 22). Contribution of DHN melanin to survival and growth of Neoarthrinium moseri in extreme environments [Conference Presentation]. IUBMB Focused Meeting on Extremophilic Fungi (FUN-EX 2023), Ljubljana, Slovenia. ( reposiTUm)

Hochenegger, N., Mach, R., Mach-Aigner, A., & Zimmermann, C. (2023, March 7). On the interaction of SREBP Sah2 and the pleiotropic regulator Xpp1 in Trichoderma reesei [Poster Presentation]. 16th European Conference on Fungal Genetics, Innsbruck, Austria. ( reposiTUm)

Masi, A. L., Stark, G., Pfnier, J., Daza Serna, L. V., Mach-Aigner, A., & Mach, R. (2022, September 22). Erythritol production by the saprobe Trichoderma reesei: screening and optimization using Design of Experiments to better understand the effect of nitrogen source, carbon source, pH and temperature. [Conference Presentation]. 14th ÖGMBT Annual Meeting, Vienna, Austria. ( reposiTUm)

Daza Serna, L. V., Masi, A. L., Serna Loaiza, S., Pfnier, J., Stark, G., Mach, R., Mach-Aigner, A., & Friedl, A. (2022, June 15). Detoxification strategy of wheat straw hemicellulosic hydrolysate for cultivating Trichoderma reesei: a contribution towards the wheat biorefinery. [Conference Presentation]. Corfu 2022 - 9th International Conference on Sustainable Solid Waste Management, Corfu, Greece. ( reposiTUm)

Pflügl, S., Neuendorf, C. S., Vignolle, G. A., Novak, K., Zimmermann, C., Tomin, T., Mach, R., & Birner-Grünberger, R. (2022, August 11). Acetobacterium woodii as a flexible and robust host for formate-based bioproduction [Poster Presentation]. Gordon Research Conference: Molecular Basis of Microbial One-Carbon Metabolism, Southbridge, MA, United States of America (the). https://doi.org/10.34726/3281 ( reposiTUm)

Daza Serna, L. V., Knezevic, K., Kreuzinger, N., Mach-Aigner, A. R., Mach, R., Krampe, J., & Friedl, A. (2021, October 13). Recovery of salts from synthetic erythritol culture broth via electrodialysis: an alternative strategy from the bin to the loop. [Conference Presentation]. 16th Conference of Sustainable Development of Energy, Water and Environment Systems, Dubrovnik, Croatia. http://hdl.handle.net/20.500.12708/154087 ( reposiTUm)

dos Santos, A. C. V. D., Heydenreich, R., Derntl, C., Mach-Aigner, A. R., Mach, R. L., Ramer, G., & Lendl, B. (2020). Near-field IR detection enables nanoscale computational staining. SciX 2020, Online, Unknown. http://hdl.handle.net/20.500.12708/101563 ( reposiTUm)

Mello de Sousa, T. M., Derntl, C., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). Strain degeneration in Trichoderma reesei is triggered by high protein productivity and influenced by DNA methylation. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50134 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). A long noncoding RNA promotes cellulase expression in Trichoderma reesei. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50135 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). Long non-coding RNA meets transactivator for regulation of cellulase expression. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50132 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2018). lnducible expression of secondary metabolites using a synthetic transcription factor in an essentially background-free system. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50133 ( reposiTUm)

Till, P., Pucher, M., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). Regulatory interplay of a long non-coding RNA and a transactivator in a filamentous fungus. In https://rnasociety.dk/events/4th-annual-rna-meeting (p. 1). http://hdl.handle.net/20.500.12708/50293 ( reposiTUm)

Mach, R. L. (2017). Imagineering Nature - Closing Cycles: Examples for a bio-based industry. IEA Bioenergy Task 42 Biorefining Vernetzungstreffen und Stakeholder Workshop, Wien, Austria. http://hdl.handle.net/20.500.12708/100436 ( reposiTUm)

Mach, R. L. (2017). Imagineering Nature - Closing Cycles: Beispiele für eine biobasierte Ökonomie. Science Breakfast, Wien, Austria. http://hdl.handle.net/20.500.12708/100509 ( reposiTUm)

Mach, R. L. (2017). Alternative Süßungsmittel. 21. Heidelberger Ernährungsforum, Heidelberg, Germany. http://hdl.handle.net/20.500.12708/100437 ( reposiTUm)

Ressmann, A., Gonzalez Garcia, E., Zirbs, R., Gärtner, P., Mach, R. L., Brunner, K., & Schröder, K. (2016). From genetically modified maize to horse meat: New ionic liquid solutions in food control. COST CM1206 Meeting, Poznan, Poland. http://hdl.handle.net/20.500.12708/100212 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Stadler, H., Derx, J., Kirschner, A. K. T., Mach, R. L., Cervero-Arago, S., Blaschke, A. P., & Sommer, R. (2014). Opening the Black Box of Microbial Faecal Pollution in (Ground) Water Resources. Joint CONFERENCE PROMISE and BacFood Net Persistent lifestyles of food - borne pathogens and its consequence, Wien, Austria. http://hdl.handle.net/20.500.12708/99535 ( reposiTUm)

Preiser, V., Mach, R. L., & Brunner, K. (2014). Selection and characterization of aptamers for the rapid detection of aflatoxin in maize. The World Mycotoxin Forum, 8th Conference, Vienna, Austria, Austria. http://hdl.handle.net/20.500.12708/99536 ( reposiTUm)

Blaschke, A. P., Sommer, R., Vierheilig, J., Reischer, G., Derx, J., Mach, R. L., Kirschner, A., & Farnleitner, A. H. (2014). Vorstellung des ICC Water & Health - Interdisziplinäre Wissenschaft und Forschung. TU-Galaabend der Forschung 2014, Wien, Austria. http://hdl.handle.net/20.500.12708/113331 ( reposiTUm)

Blaschke, A. P., Sommer, R., Vierheilig, J., Reischer, G., Derx, J., Mach, R. L., Kirschner, A., & Farnleitner, A. H. (2014). Vorstellung des ICC Water & Health - Interdisziplinäre Wissenschaft und Forschung. Lange Nacht der Forschung 2014, Wien, Austria. http://hdl.handle.net/20.500.12708/113332 ( reposiTUm)

Ressmann, A., Gonzales Garcia, E., Gärtner, P., Mach, R. L., Brunner, K., & Schröder, K. (2014). An ionic liquid-buffer system for the enhancement of DNA extraction from maize. 15th EUCHEM on Ionic Liquids and Molten Salts 2014, Tallinn, Estonia. http://hdl.handle.net/20.500.12708/99570 ( reposiTUm)

Farnleitner, A. H., Stadler, H., Reischer, G., Sommer, R., Ryzinska-Paier, G., Mach, R. L., Kirschner, A. K. T., Schuster, N., Savio, D., & Zerobin, W. (2014). New Framework for Microbial Faecal Pollution Analysis Supports Water Resource Management at all Time Scales. IWA World Water Congress & Exhibition, Lissabon, Portugal. http://hdl.handle.net/20.500.12708/99533 ( reposiTUm)

Farnleitner, A. H., Reischer, G., Kirschner, A. K. T., Blaschke, A. P., Stadler, H., Mach, R. L., & Sommer, R. (2013). Untersuchung und Bewertung der mikrobiologischen Qualität von Wasserressourcen: von der Hazard-Detektion zur Risikoabschätzung. Mikrobiologische Qualität von Trinkwasser - neue Herausforderungen, Wien, Austria. http://hdl.handle.net/20.500.12708/99199 ( reposiTUm)

Brunner, K., Zahradnik, C., Krska, R., & Mach, R. L. (2013). Isothermale DNA Amplifikation zum Nachweis von Allergenen und gentechnisch veränderten Pflanzen in Lebensmitteln. ANAKON 2013, Essen, Deutschland, EU. http://hdl.handle.net/20.500.12708/99211 ( reposiTUm)

Farnleitner, A. H., Stadler, H., Vierheilig, J., Sommer, R., Mach, R. L., Kirschner, A. K. T., & Reischer, G. (2012). Integrating molecular source tracking into target-oriented microbial water quality management and catchment protection. 33. Jahrestagung der Österreichischen Gesellschaft für Hygiene, Mikrobiologie und Präventivmedizin, Salzburg, Austria. http://hdl.handle.net/20.500.12708/98783 ( reposiTUm)

Brunner, K., Preiser, V., Götsch, D., Krska, R., & Mach, R. L. (2012). A real-time triplex assay for the accurate quantification of trichothecene and fumonisin producing Fusarium species in maize. 7#^{th} Conference of the World Mycotoxin Forum, Rotterdam, Niederlande, EU. http://hdl.handle.net/20.500.12708/98859 ( reposiTUm)

Mello de Sousa, T. M., Paes, B. G., Mach-Aigner, A. R., Mach, R. L., & Pocas-Fonseca, M. (2012). DNA methylation influence on glycoside hydrolase genes expression in Humicola grisea var. thermoidea. IV Encontro Nacional de Epigenética, Sao Paulo, Brasilien, Non-EU. http://hdl.handle.net/20.500.12708/98867 ( reposiTUm)

Farnleitner, A. H., Sommer, R., Mach, R. L., Kirschner, A. K. T., & Reischer, G. (2011). Molecular microbial source tracking : Was kann es derzeit leisten? DVGW Symposium Potential und Grenzen molekularbiologischer Methoden in der Wasserwirtschaft, Karlsruhe, Deutschland, EU. http://hdl.handle.net/20.500.12708/98522 ( reposiTUm)

Farnleitner, A. H., Vierheilig, J., Sommer, R., Mach, R. L., Kirschner, A. K. T., & Reischer, G. (2011). Integrating faecal source tracking into target-oriented microbial water quality management and catchment protection. 16#^{th} International Symposium on Health-Related Water Microbiology, Rotorua, New Zealand, Non-EU. http://hdl.handle.net/20.500.12708/98602 ( reposiTUm)

Hirschmann, J., Marchetti, M., Mach, R. L., Kubicek, C. P., & Allmaier, G. (2008). Intact spore mass spectrometry (ISMS) - vacuum MALDI TOF mass spectrometry of spores of the fungi Fusarium. MassSpec-Forum Vienna 2008, Wien, Austria. http://hdl.handle.net/20.500.12708/97922 ( reposiTUm)

Stoppacher, N., Reithner, B., Omann, M., Zeilinger, S., Brunner, K., Mach, R. L., Krska, R., & Schuhmacher, R. (2007). Identification and sequencing of Trichorzianines produced by Trichoderma atroviride. 15th International Reinhardsbrunn Symposium - Modern Fungicides and Antifungal Compounds, Friedrichroda, Germany, EU. http://hdl.handle.net/20.500.12708/97669 ( reposiTUm)

Stoppacher, N., Reithner, B., Omann, M., Zeilinger, S., Brunner, K., Mach, R. L., Krska, R., & Schuhmacher, R. (2007). Detection and Characterization of Peptaibols in Trichoderma atroviride Culture Samples by LC-MS/MS. MassSpec - Forum - Vienna, Wien, Austria. http://hdl.handle.net/20.500.12708/97670 ( reposiTUm)

Tietz, A., Hornek, R., Langergraber, G., Mach, R. L., & Haberl, R. (2006). Diversity of ammonia oxidizing bacteria in a vertical flow constructed wetland. IWA 10th International Conference on Wetlands and Pollution Control, Lisbon, Portugal, EU. http://hdl.handle.net/20.500.12708/110314 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., & Mach, R. L. (2005). Xyr1 is the main regulator of the xylanolytic and cellolytic enzyme system in Trichoderma reesei. VAAM - Symposium, Bochum, Austria. http://hdl.handle.net/20.500.12708/96869 ( reposiTUm)

Mach, R. L. (2003). Angewandte Molekularbiologie in verschiedenen Bereichen der Umweltbiotechnologie: Ausgewählte Beispiele einer Verknüpfung von Grundlagenforschung mit anwendungs-orientierten Projekten. Technische Universität Graz, Austria. http://hdl.handle.net/20.500.12708/96175 ( reposiTUm)

Reischer, G., Farnleitner, A. H., & Mach, R. L. (2003). Quantitative Bestimmung von Fusarium graminearum in infizierten Pflanzenmaterial während aller Stadien des Befalls. Mold-Meeting der Fachgruppe Mikrobiologie & Molekularbiologie der Arbeitsgemeinschaft Landwirtschaftlicher Versuchsanstalten in Österreich, Gars ,Österreich, Austria. http://hdl.handle.net/20.500.12708/96176 ( reposiTUm)

Farnleitner, A. H., Burtscher, M. M., Reischer, G., Wilhartitz, I., Ryzinska, G., Hornek, R., Kirschner, A. K. T., & Mach, R. L. (2003). Principle and Application of PCR based DGGE amplicon profiling for water supply. 2nd European Workshop “Molecular microbiological methods for safe water supply,” Nieuwegen, Netherlands (the). http://hdl.handle.net/20.500.12708/96177 ( reposiTUm)

Stricker, A. R., Farnleitner, A. H., Wilhartitz, I., Hornek, R., & Mach, R. L. (2003). Bacteroides sp. DNA detection in feces with Scorpion-Primer in Quantitative Real-Time PCR. iCycler User Meeting, Wien, Austria. http://hdl.handle.net/20.500.12708/96178 ( reposiTUm)

Zeilinger, S., Schmoll, M., Pail, M., Mach, R. L., & Kubicek, C. P. (2002). C.P. Involvement of chromatin rearrangements in the regulation of Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2. Joint Trichoderma - Gliogladium and Tricell Meeting, Cancun, Mexico, Austria. http://hdl.handle.net/20.500.12708/95950 ( reposiTUm)

Zeilinger, S., Schmoll, M., Pail, M., Mach, R. L., & Kubicek, C. P. (2002). Nucleosome transactions on the Hypocrea jecorina ebh2 promoter reveal a novel role for the carbon catabolite repressor protein Cre1 in chromatin rearrangement. 6#^{th} European Conference on Fungal Genetics, Pisa, Italy, Austria. http://hdl.handle.net/20.500.12708/98161 ( reposiTUm)

Mach, R. L. (2002). Regulation of gene expression in industrial fungi : the Trichoderma -xylanase model case. 6#^{th} European Conference on Fungal Genetics, Pisa, Italy, Austria. http://hdl.handle.net/20.500.12708/96301 ( reposiTUm)

Mach, R. L., Kullnig, C., Farnleitner, A. H., Reischer, G., Adler, A., & Kubicek, C. P. (2001). Detection of different Fusarium spp. Of the section Discolor and Sporotrichiella using DGGE (Denaturating Gradient Gele Electrophoresis ) and ARMS PCR (Amplification Refractory Mutation System) . ALVA- meeting 2001, Wolfpassing ,Austria, Austria. http://hdl.handle.net/20.500.12708/96298 ( reposiTUm)

Mach, R. L., Kullnig, C., Farnleitner, A. H., Reischer, G., Adler, A., & Kubicek, C. P. (2001). Molecular dedection of the F.langsethae ,F. poae ,and F. sporotrichioides complex . COST 835, Athen ,Greece, Austria. http://hdl.handle.net/20.500.12708/96299 ( reposiTUm)

Mach, R. L., Gherbawy, Y., Adler, A., Kullnig, C., Prillinger, H.-J., & Kubicek, C. P. (2001). Systematics of the Gibberella fujikuroi Species  complex Isolated from Austrian Maize . Mold Meeting, Gars am Kamp, Austria. http://hdl.handle.net/20.500.12708/96300 ( reposiTUm)

Mach, R. L. (2000). Functional characterization of the xylanase 1 promoter of Trichoderma reesei as a basis for the tailor - made production of enzyme mixtures . European Congress on fungal genetics, Göttingen , Germany, Austria. http://hdl.handle.net/20.500.12708/96410 ( reposiTUm)

Wacenovsky, C., Rauscher, R., Kubicek, C. P., & Mach, R. L. (2000). Hypocrea jecorina (Trichoderma reesei) xyn1 expression is regulated by a concerted action of three different DNA binding proteins . 5#^{th} European Conference on fungal genetics, Arcachon ,France, Austria. http://hdl.handle.net/20.500.12708/96297 ( reposiTUm)

Mach, R. L., Kullnig, C., & Kubicek, C. P. (1999). Identification of Austrian Fusarium spp.by molecular biological methods . ALVA-meeting 1999, Linz , Austria, Austria. http://hdl.handle.net/20.500.12708/96296 ( reposiTUm)

Mach, R. L. (1999). Functional characterization of the xylanase 1 promoter of Trichoderma reesei . ÖGBT/ TU Wien, Vienna ,Austria, Austria. http://hdl.handle.net/20.500.12708/96295 ( reposiTUm)

Mach, R. L., Payer, K., Zeilinger, S., Galhaup, C., Jaksits, S., Lorito, M., & Kubicek, C. P. (1998). Trichoderma harzianum chitinases and their function in the regulation of biocontrol . 1.Symposium on Phytopathologie in Horticulture, Vienna ,Austria, Austria. http://hdl.handle.net/20.500.12708/96294 ( reposiTUm)

Mach, R. L., Peterbauer, C., Payer, K., Jaksits, S., Woo, S. L., Lorito, M., & Kubicek, C. P. (1998). Analysis of regulation of the nag1 (N-Acetyl-ß-D-glucosaminidase) and of ech42 (endochitinase) gene expression in the mycoparasite Trichoderma harzianum . COST 835, Athen ,Greece, Austria. http://hdl.handle.net/20.500.12708/96293 ( reposiTUm)

Mach, R. L., Zeilinger, S., Galhaup, C., Payer, K., Fekete, E., Lorito, M., Woo, S. L., & Kubicek, C. P. (1998). The filamentous fungus Trichoderma harzianum is a  potent mycoparasite . COST 835, Athen ,Greece, Austria. http://hdl.handle.net/20.500.12708/96292 ( reposiTUm)

Mach, R. L., Strauss, J., & Kubicek, C. P. (1998). DNA binding ability of Cre1 of Trichoderma reesei is regulated by phosphorylation/dephosphorylation . 4#^{th} European Conference on Fungal Genetics, Leon , Spain, Austria. http://hdl.handle.net/20.500.12708/96291 ( reposiTUm)

Mach, R. L., Strauss, J., & Kubicek, C. P. (1997). Phosphorylation/dephosphorylation regulates binding of the carbon catabolite repressor  Cre1 of Trichoderma reesei to its corresponding consensus sequence. VAAM-Conference, Molecular Biology of Fungi, Landshut , Germany, Austria. http://hdl.handle.net/20.500.12708/96290 ( reposiTUm)

Mach, R. L., Strauss, J., Zeilinger, S., & Kubicek, C. P. (1996). Carbon catabolite repression of xylanase gene expression in Trichoderma reesei interferes with xy1 and xy2 transcription in different ways . 8#^{th} International congress of Mycology Division, Jerusalem , Israel, Austria. http://hdl.handle.net/20.500.12708/96289 ( reposiTUm)

Mach, R. L., Seiboth, B., Rauscher, R., Stangl, H., Gruber, H., & Kubicek, C. P. (1996). A CCAAT-box mediates sophorose-induction of cbh2 (cellobiohydrolase II-encoding ) gene expression in the filamentuos fungus Trichoderma reesei . 3#^{rd} European Conference on Fungal Genetics, Münster ,Germany, Austria. http://hdl.handle.net/20.500.12708/96288 ( reposiTUm)

Mach, R. L., Strauss, J., Schindler, M., Zeilinger, S., Adler, A., & Kubicek, C. P. (1995). Glucose repression of xylanase formation by Trichoderma reesei regulates xyn1 but not xyn2 gene expression and is mediated by the Cre1 gene product . EMBO Workshop on the molecular biology of filamentous fungi , genome structure ,maintendance and expression, Ambelside ,UK, Austria. http://hdl.handle.net/20.500.12708/96286 ( reposiTUm)

Mach, R. L., & Strauss, J. (1995). Mechanism of Cre1 mediation of carbon catabolite repression in Trichoderma reesei . Joint Meeting  BIOTEC, Vienna ,Austria, Austria. http://hdl.handle.net/20.500.12708/96287 ( reposiTUm)

Kubicek, C. P., Allmaier, G., Mach, R. L., & Druzhinina, I. (2009). Multidisziplinäre Detektion und Beurteilung einheimischer Fusarien (Endbericht). http://hdl.handle.net/20.500.12708/35745 ( reposiTUm)

Zessner, M., Blaschke, A. P., Farnleitner, A. H., Kavka, G. G., Mach, R. L., Tentschert, K., & Kroiss, H. (2006). Auswirkungen von Versickerung und Verrieselung von durch Kleinkläranlagen mechanisch-biologisch gereinigtem Abwasser in dezentralen Lagen. http://hdl.handle.net/20.500.12708/32595 ( reposiTUm)

Adam, G., Hauser, M. T., Strauss, J., Mach, R. L., & Krska, R. (2006). GEN-AU pilot project: FUSARIUM, Virulence mechanisms of the plant patogenic fungus Fusarium graminearum and resistance mechanisms in host plants, Final Report January 2003 - May 2006. http://hdl.handle.net/20.500.12708/32594 ( reposiTUm)

Humpesch, U., Donabaum, K., Farnleitner, A. H., Kabas, W., Kirschner, A., Kreuzinger, N., Mach, R. L., Matsché, N., Laimer, W., Riedler, P., Salbrechter, M., Wolfram, G., Wychera, U., Beiwl, C., Diamant, A., Hintermaier, S., Munteanu, A., & Schrammel, A. (2005). Neue Donau 2004; 2 Jahre ohne Hochwassereintrag - Beste Wasserqualität in der Zeitreihe seit 1987. http://hdl.handle.net/20.500.12708/33784 ( reposiTUm)

Mach, R. L., Farnleitner, A. H., Burtscher, M. M., & Reischer, G. (2004). Molekularbiologische Untersuchungen des Biofilm Aufwuchses auf 10µ und 50µ Filtersäcken. http://hdl.handle.net/20.500.12708/32317 ( reposiTUm)

Mach, R. L., Reischer, G., Kubicek, C. P., & Druzhinina, I. (2004). Eine kritische Beurteilung der biologischen Aktivität heimischer Fusarium spp. auf natürlichen Substraten. http://hdl.handle.net/20.500.12708/32316 ( reposiTUm)

Kroiss, H., Zessner, M., Schilling, C., Blaschke, A. P., Asztalos, J., Kirnbauer, R., Tentschert, E.-H., Hassler, C., Kavka, G., Farnleitner, A. H., & Mach, R. L. (2004). Auswirkung von Versickerung und Verrieselung von durch Kleinkläranlagen mechanisch biologisch gereinigtem Abwasser in dezentralen Lagen, Phase I, Endbericht. http://hdl.handle.net/20.500.12708/33371 ( reposiTUm)

Reischer, G., & Mach, R. L. (2003). Zweiter Bericht zum Forschungsprojekt FP 1264: Eine kritische Beurteilung der biologischen Aktivität ein-heimischer Fusarium spp. auf natürlichen Substraten. http://hdl.handle.net/20.500.12708/32187 ( reposiTUm)

Reischer, G., & Mach, R. L. (2003). Interims Report on “The Trichoderma reesei xylanase2 transcriptosome : regulation and modification of the key factors .” http://hdl.handle.net/20.500.12708/32216 ( reposiTUm)

Reischer, G., & Mach, R. L. (2003). Interims Report on "Microbial Comunity Structure Dynamics in Spring Water and Respective Biofilm Compartments of Alpine Karst Aquifers. http://hdl.handle.net/20.500.12708/32217 ( reposiTUm)

Reischer, G., & Mach, R. L. (2003). Interims Report on "Monitoring of ß-Proteobacterial Amonia Oxidisers in Wastewater Treatment Plants Differing in Nitrification Capacity.A polyphasic and moleculary based investigation of ß-PAO (ß-proteobacterial ammonia oxidisers) nitrification in activated sludge systems : Development and application of novel techniques to monitor a potential key-step in the wastewater nitrification process. http://hdl.handle.net/20.500.12708/32218 ( reposiTUm)

Farnleitner, A. H., & Mach, R. L. (2002). Differentiation and source identification of bacterial contamination in a representative karst catchment area and reference locations. http://hdl.handle.net/20.500.12708/32178 ( reposiTUm)

Farnleitner, A. H., & Mach, R. L. (2002). Bedeutung von Clostridium perfringens als mikrobiologischer Parameter in der Wasseruntersuchung. http://hdl.handle.net/20.500.12708/32177 ( reposiTUm)

Kroiss, H., Matsche, N., Vogel, B., Zessner, M., Kavka, G. G., Farnleitner, A. H., Mach, R. L., Gutknecht, D., Blaschke, A. P., Heinecke, U., Hütter, T., Sengschmitt, D., & Steiner, K. (2002). Auswirkungen der Versickerung von Biologisch gereinigtem Abwasser auf das Grundwasser. http://hdl.handle.net/20.500.12708/32176 ( reposiTUm)

Burger, I., Schmal, M., Peikert, K., Fourtis, L., Suster, C., Stanetty, C., Schnalzer, D., Birner-Gruenberger, R., Mach, R. L., Mach-Aigner, A. R., Schittmayer, M., & Zimmermann, C. (2024). Discovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei. bioRxiv. https://doi.org/10.1101/2024.06.20.599701 ( reposiTUm)