Yuan, Z.-L., Wu, Q., Xu, L., Druzhinina, I., Stukenbrock, E. H., Nieuwenhuis, B. P. S., Zhong, Z., Liu, Z.-J., Wang, X., Cai, F., Kubicek, C. P., Shan, X., Wang, J., Shi, G., Peng, L., & Martin, F. M. (2022). Genomic landscape of a relict fir-associated fungus reveals rapid convergent adaptation towards endophytism. The ISME Journal, 16(5), 1294–1305. https://doi.org/10.1038/s41396-021-01176-6 ( reposiTUm)

Daly, P., Cai, F., Kubicek, C. P., Jiang, S., Grujic, M., Rahimi, M. J., Sheteiwy, M. S., Giles, R., Riaz, A., de Vries, R. P., Akcapinar, G. B., Wei, L., & Druzhinina, I. S. (2021). From lignocellulose to plastics: Knowledge transfer on the degradation approaches by fungi. Biotechnology Advances, 50(107770), 107770. https://doi.org/10.1016/j.biotechadv.2021.107770 ( reposiTUm)

Zapparata, A., Baroncelli, R., Brandström Durling, M., Kubicek, C. P., Karlsson, M., Vannacci, G., & Sarrocco, S. (2021). Fungal cross-talk: an integrated approach to study distance communication. Fungal Genetics and Biology, 148(103518), 103518. https://doi.org/10.1016/j.fgb.2021.103518 ( reposiTUm)

Grujić, M., Dojnov, B., Potočnik, I., Atanasova, L., Duduk, B., Srebotnik, E., Druzhinina, I. S., Kubicek, C. P., & Vujčić, Z. (2019). Superior cellulolytic activity of Trichoderma guizhouense on raw wheat straw. World Journal of Microbiology and Biotechnology, 35(194). https://doi.org/10.1007/s11274-019-2774-y ( reposiTUm)

Kubicek, C. P., Steindorff, A. S., Chenthamara, K., Manganiello, G., Henrissat, B., Zhang, J., Cai, F., Kopchinskiy, A. G., Kubicek, E. M., Kuo, A., Baroncelli, R., Sarrocco, S., Noronha, E. F., Vannacci, G., Shen, Q., Grigoriev, I. V., & Druzhinina, I. S. (2019). Evolution and comparative genomics of the most common Trichoderma species. BMC Genomics, 20(485). https://doi.org/10.1186/s12864-019-5680-7 ( reposiTUm)

Zhang, J., Miao, Y., Rahimi, M. J., Zhu, H., Steindorff, A., Schiessler, S., Cai, F., Pang, G., Chenthamara Kariyankode, K., Xu, Y., Kubicek, C. P., Shen, Q., & Druzhinina, I. S. (2019). Guttation capsules containing hydrogen peroxide: an evolutionarily conserved NADPH oxidase gains a role in wars between related fungi. Environmental Microbiology, 21(8), 2644–2658. https://doi.org/10.1111/1462-2920.14575 ( reposiTUm)

da Silva Amaral, L., Rodrigues-Filha, E., Kubicek, C. P., Herwig, C., Marchetti-Deschmann, M., & Allmaier, G. (2018). Optimization of sample preparation for intact cell mass spectrometry (matrix-assisted laser desorption/ionization linear time-of-flight mass spectrometry) of endophytic Xylaria. Rapid Communications in Mass Spectrometry, 32(10), 815–823. https://doi.org/10.1002/rcm.8098 ( reposiTUm)

Druzhinina, I., Chenthamara-Kariyankode, K., Zhang, J., Atanasova, L., Yang, D., Miao, Y., Rahimi, M., Grujic, M., Cai, F., Pourmehd, S., Abu Salim, K., Pretzer, C., Kopchinskiy, A. G., Henrissat, B., Kuo, A., Hundley, H., Wang, M., Aerts, A., Salamov, A., & Kubicek, P. C. (2018). Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts. PLoS Genetics, 14(4), e1007322. https://doi.org/10.1371/journal.pgen.1007322 ( reposiTUm)

Przylucka, A., Akcapinar, G. B., Chenthamara, K., Cai, F., Grujic, M., Karpenko, J., Livoi, M., Shen, Q., Kubicek, C. P., & Druzhinina, I. S. (2017). HFB7 - A novel orphan hydrophobin of the Harzianum and Virens clades of Trichoderma, is involved in response to biotic and abiotic stresses. Fungal Genetics and Biology, 102, 63–76. https://doi.org/10.1016/j.fgb.2017.01.002 ( reposiTUm)

Przylucka, A., Bayram Akcapinar, G., Bonazza, K., Machado Mello De Sousa, T., Mach-Aigner, A. R., Lobanov, V., Grothe, H., Kubicek, C. P., Reimhult, E., & Druzhinina, I. (2017). COMPARATIVE PHYSIOCHEMICAL ANALYSIS OF HYDROPHOBINS PRODUCED IN ESCHERICHIA COLI AND PICHIA PASTORIS. Colloids and Surfaces B: Biointerfaces, 159, 913–923. https://doi.org/10.1016/j.colsurfb.2017.08.058 ( reposiTUm)

Qin, Y., Pan, X., Kubicek, C., Druzhinina, I., Chenthamara, K., Labbé, J., & Yuan, Z. (2017). Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.00158 ( reposiTUm)

Druzhinina, I., & Kubicek, C. P. (2017). Genetic engineering of Trichoderma reesei cellulases and their production. Microbial Biotechnology, 10(6), 1485–1499. http://hdl.handle.net/20.500.12708/147241 ( reposiTUm)

Miao, Y., Li, P., Li, G., Liu, D., Druzhinina, I., Kubicek, C. P., Shen, Q., & Zhang, R. (2017). Two degradation strategies for overcoming the recalcitrance of natural lignocellulosic xylan by polysaccharides-binding GH1 0 and GH11 xylanases of filamentous fungi. Environmental Microbiology, 19(3), 1054–1064. http://hdl.handle.net/20.500.12708/146476 ( reposiTUm)

Wang, L.-W., Wang, J.-L., Chen, J., Chen, J.-J., Shen, J.-W., Feng, X.-X., Kubicek, C. P., Lin, F.-C., Zhang, C.-L., & Chen, F.-Y. (2017). A Novel Derivative of (-)mycousnine Produced by the Endophytic Fungus Mycosphaerella nawae, Exhibits High and Selective Immunosuppressive Activity on T Cells. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.01251 ( reposiTUm)

Sarrocco, S., Matarese, F., Baroncelli, R., Vannacci, G., Seidl-Seiboth, V., Kubicek, C. P., & Vergara, M. (2017). The Constitutive Endopolygalacturonase TvPG2 Regulates the Induction of Plant Systemic Resistance by Trichoderma virens. Phytopathology, 107(5), 537–544. https://doi.org/10.1094/phyto-03-16-0139-r ( reposiTUm)

Gaskell, J., Kersten, P., Larrondo, L. F., Canessa, P., Martinez, D. A., Hibbett, D., Schmoll, M., Kubicek, C. P., Martinez, A. T., Yadav, J., Master, E., Magnuson, J. K., Yaver, D., Berka, R., Lail, K., Chen, C., LaButti, K., Nolan, M., Lipzen, A., & Cullen, D. (2017). Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genomics Data, 14, 21–23. https://doi.org/10.1016/j.gdata.2017.08.003 ( reposiTUm)

Bischof, R., Seiboth, B., Horejs, J., & Kubicek, C. P. (2016). L-Methionine responsive dioxygenase genes provide promoters for conditional gene expression in Trichoderma reesei. New Biotechnology, 33, S2. https://doi.org/10.1016/j.nbt.2016.06.735 ( reposiTUm)

Zhang, J., Akcapinar, G. B., Atanasova, L., Rahimi, M., Przylucka, A., Yang, D., Kubicek, C. P., Zhang, R., Shen, Q., & Druzhinina, I. (2016). The neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for mycotrophy and self-defence. Environmental Microbiology, 18(2), 580–597. http://hdl.handle.net/20.500.12708/148647 ( reposiTUm)

Druzhinina, I. S., Kubicek, E. M., & Kubicek, C. P. (2016). Several steps of lateral gene transfer followed by events of “birth-and-death” evolution shaped a fungal sorbicillinoid biosynthetic gene cluster. BMC Evolutionary Biology, 16(269). https://doi.org/10.1186/s12862-016-0834-6 ( reposiTUm)

Druzhinina, I. S., Kopchinskiy, A. G., Kubicek, E. M., & Kubicek, C. P. (2016). A complete annotation of the chromosomes of the cellulase producer Trichoderma reesei provides insights in gene clusters, their expression and reveals genes required for fitness. Biotechnology for Biofuels, 9(75). https://doi.org/10.1186/s13068-016-0488-z ( reposiTUm)

de Man, T., Stajich, J., Kubicek, C. P., Teiling, C., Chenthamara-Kariyankode, K., Atanasova, L., & Druzhinina, I. (2016). Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture. Proceedings of the National Academy of Sciences, 113(13), 3567–3572. http://hdl.handle.net/20.500.12708/149334 ( reposiTUm)

Kubicek, C. P., & Kubicek, E. M. (2016). Enzymatic deconstruction of plant biomass by fungal enzymes. Current Opinion in Chemical Biology, 35, 51–57. https://doi.org/10.1016/j.cbpa.2016.08.028 ( reposiTUm)

Ghassemi, S., Lichius, A., Bidard, F., Lemoine, S., Rossignol, M.-N., Herold, S., Seidl-Seiboth, V., Seiboth, B., Espeso, E. A., Margeot, A., & Kubicek, C. P. (2015). The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei. Molecular Microbiology, 96(2), 405–418. http://hdl.handle.net/20.500.12708/150645 ( reposiTUm)

Lichius, A., Bidard, F., Buchholz, F., Le Crom, S., Martin, J., Schackwitz, W., Austerlitz, T., Grigoriev, I. V., Baker, S. E., Margeot, A., Seiboth, B., & Kubicek, C. P. (2015). Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype. BMC Genomics, 16(326). https://doi.org/10.1186/s12864-015-1526-0 ( reposiTUm)

Ribitsch, D., Herrero-Acero, E., Przylucka, A., Zitzenbacher, S., Marold, A., Gamerith, C., Tscheließnig, R., Jungbauer, A., Rennhofer, H., Lichtenegger, H., Amenitsch, H., Bonazza, K., Kubicek, C. P., Druzhinina, I., & Gübitz, G. (2015). Enhanced Cutinase-Catalyzed Hydrolysis of Polyethylene Terephthalate by Covalent Fusion to Hydrophobins. Applied and Environmental Microbiology, 81(11), 3586–3592. http://hdl.handle.net/20.500.12708/151050 ( reposiTUm)

Aghcheh, R. K., & Kubicek, C. P. (2015). Epigenetics as an emerging tool for improvement of fungal strains used in biotechnology. Applied Microbiology and Biotechnology, 99(15), 6167–6181. https://doi.org/10.1007/s00253-015-6763-2 ( reposiTUm)

Nemeth, Z., Karimi Aghcheh, R., Fekete, E., Sandor, E., Paholcsek, M., Karaffa, L., & Kubicek, C. P. (2015). The Velvet Orthologue Veli1 of Trichoderma reesei is Essential for Cellulase Gene Expression. Acta Microbiologica et Immunologica Hungarica, 62(Supplement), 79. http://hdl.handle.net/20.500.12708/151047 ( reposiTUm)

Karaffa, L., Díaz, R., Papp, B., Fekete, E., Sándor, E., & Kubicek, C. P. (2015). A deficiency of manganese ions in the presence of high sugar concentrations is the critical parameter for achieving high yields of itaconic acid by Aspergillus terreus. Applied Microbiology and Biotechnology, 99(19), 7937–7944. https://doi.org/10.1007/s00253-015-6735-6 ( reposiTUm)

Yang, D., Pomraning, K. R., Kopchinskiy, A., Karimi Aghcheh, R., Atanasova, L., Chenthamara-Kariyankode, K., Baker, S. E., Zhang, R., Shen, Q., Freitag, M., Kubicek, C. P., & Druzhinina, I. (2015). Genome Sequence and Annotation of Trichoderma parareesei, the Ancestor of the Cellulase Producer Trichoderma reesei. Genome Announcements, 3(4), 1. http://hdl.handle.net/20.500.12708/151051 ( reposiTUm)

Linke, R., Thallinger, G. G., Haarmann, T., Eidner, J., Schreiter, M., Lorenz, P., Seiboth, B., & Kubicek, C. P. (2015). Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial cellulase producing fungus. Biotechnology for Biofuels, 8(155). https://doi.org/10.1186/s13068-015-0311-2 ( reposiTUm)

Lichius, A., Bidard, F., Buchholz, F., Le Crom, S., Martin, J., Schackwitz, W., Austerlitz, T., Grigoriev, I. V., Baker, S. E., Margeot, A., Seiboth, B., & Kubicek, C. P. (2015). Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype. BMC Genomics, 16(725). https://doi.org/10.1186/s12864-015-1917-2 ( reposiTUm)

Mpika, J., Kébé Boubacar, I., Issali, A. E., N´Guessan, K. F., Druzhinina, I., Komon-Zelazowska, M., Kubicek, C. P., & Aké, S. (2015). Efficacité au Champ de Quatre Espèces de Trichoderma dans la Lutte Biologique Contre Phytophthora Palmivora, Agent de la Pourriture Brune des Cabosses du Cacaoyer en Côte d’Ivoire. European Journal of Scientific Research, 134(2), 158–172. http://hdl.handle.net/20.500.12708/151402 ( reposiTUm)

Xu, X.-H., Wang, C., Li, S.-X., Su, Z.-Z., Zhou, H.-N., Mao, L.-J., Feng, X.-X., Liu, P.-P., Chen, X., Hugh Snyder, J., Kubicek, C. P., Zhang, C.-L., & Lin, F.-C. (2015). Friend or foe: differential responses of rice to invasion by mutualistic or pathogenic fungi revealed by RNAseq and metabolite profiling. Scientific Reports, 5(13624). https://doi.org/10.1038/srep13624 ( reposiTUm)

Bischof, R. H., Horejs, J., Metz, B., Gamauf, C., Kubicek, C. P., & Seiboth, B. (2015). L‑Methionine repressible promoters for tuneable gene expression in Trichoderma reesei. Microbial Cell Factories, 14(120). https://doi.org/10.1186/s12934-015-0308-3 ( reposiTUm)

Kubicek, C. P., Starr, T. L., & Glass, L. (2014). Plant Cell Wall-Degrading Enzymes and Their Secretion in Plant-Pathogenic Fungi. Annual Review of Phytopathology, 52, 427–451. http://hdl.handle.net/20.500.12708/157838 ( reposiTUm)

Fekete, E., Karaffa, L., Karimi Aghcheh, R., Nemeth, Z., Fekete, E., Orosz, A., Paholcsek, M., Stagel, A., & Kubicek, C. P. (2014). The transcriptome of lae1 mutants of Trichoderma reesei cultivated at constant growth rates reveals new targets of LAE1 function. BMC Genomics, 15(447). https://doi.org/10.1186/1471-2164-15-447 ( reposiTUm)

Karimi Aghcheh, R., Németh, Z., Atanasova, L., Fekete, E., Paholcsek, M., Sándor, E., Aquino, B., Druzhinina, I. S., Karaffa, L., & Kubicek, C. P. (2014). The VELVET A Orthologue VEL1 of Trichoderma reesei Regulates Fungal Development and Is Essential for Cellulase Gene Expression. PLoS ONE, 9(11), e112799. https://doi.org/10.1371/journal.pone.0112799 ( reposiTUm)

Hori, C., Ishida, T., Igarashi, K., Samejima, M., Suzuki, H., Master, E., Ferreira, P., Ruiz-Dueñas, F., Held, B., Canessa, P., Larrondo, L. F., Schmoll, M., Druzhinina, I., Kubicek, P. C., Gaskell, J. A., Kersten, P., St. John, F., Glasner, J., Sabat, G., & Cullen, D. (2014). Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood. PLoS Genetics, 10(12), Article 1004759. https://doi.org/10.1371/journal.pgen.1004759 ( reposiTUm)

Lichius, A., Seidl-Seiboth, V., Seiboth, B., & Kubicek, C. P. (2014). Nucleo-cytoplasmic shuttling dynamics of the transcriptional regulators XYR1 and CRE1 under conditions of cellulase and xylanase gene expression in Trichoderma reesei. Molecular Microbiology, 94(5), 1162–1178. http://hdl.handle.net/20.500.12708/157235 ( reposiTUm)

Xu, X.-H., Su, Z.-Z., Wang, C., Kubicek, C. P., Feng, X.-X., Mao, L.-J., Wang, J.-Y., Chen, C., Lin, F.-C., & Zhang, C.-L. (2014). The rice endophyte Harpophora oryzae genome reveals evolution from a pathogen to a mutualistic endophyte. Scientific Reports, 4(5783). https://doi.org/10.1038/srep05783 ( reposiTUm)

Przylucka, A., Ribitsch, D., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2014). Hydrophobins class I versus class II: Trichoderma virens HFB9a and HFB9b (class I) are more effective as enhancing agents in enzymatic PET hydrolysis and surface modulators compared to HFB4 and HFB7 (class II). New Biotechnology, 31, S190. https://doi.org/10.1016/j.nbt.2014.05.935 ( reposiTUm)

Poggi-Parodi, D., Bidard, F., Pirayre, A., Portnoy, T., Blugeon, C., Seiboth, B., Kubicek, C. P., Le Crom, S., & Margeot, A. (2014). Kinetic transcriptome analysis reveals an essentially intact induction system in a cellulase hyper-producer Trichoderma reesei strain. Biotechnology for Biofuels, 7(173). https://doi.org/10.1186/s13068-014-0173-z ( reposiTUm)

Karaffa, L., Fekete, E., Novak, L., Punt, P. J., Seiboth, B., & Kubicek, C. P. (2013). Mechanisms of the induction of cellulase genes in Trichoderma reesei grown on lactose: A Metabolomics Approach. Acta Microbiologica et Immunologica Hungarica, 60(Supplement), 156–157. http://hdl.handle.net/20.500.12708/155386 ( reposiTUm)

Atanasova, L., Knox, B. P., Kubicek, C. P., Druzhinina, I., & Baker, S. E. (2013). The Polyketide Synthase Gene pks4 of Trichoderma reesei Provides Pigmentation and Stress Resistance. Eukaryotic Cell, 12(11), 1499–1508. http://hdl.handle.net/20.500.12708/155729 ( reposiTUm)

Mulaw, T., Druzhinina, I., Kubicek, C., & Atanasova, L. (2013). Novel Endophytic Trichoderma spp. Isolated from Healthy Coffea arabica Roots are Capable of Controlling Coffee Tracheomycosis. Diversity, 5(4), 750–766. https://doi.org/10.3390/d5040750 ( reposiTUm)

Herold, S., Bischof, R., Metz, B., Seiboth, B., & Kubicek, C. P. (2013). Prepared for the possible: xylanase gene transcription in Trichoderma reesei is triggered by different inducers representing different hemicellulosic pentose polymers. Eukaryotic Cell, 12(3), 390–398. http://hdl.handle.net/20.500.12708/155059 ( reposiTUm)

Karaffa, L., Coulier, L., Fekete, E., Overkamp, K. M., Druzhinina, I. S., Mikus, M., Seiboth, B., Novák, L., Punt, P. J., & Kubicek, C. P. (2013). The intracellular galactoglycome in Trichoderma reesei during growth on lactose. Applied Microbiology and Biotechnology, 97(12), 5447–5456. https://doi.org/10.1007/s00253-012-4667-y ( reposiTUm)

Karimi Aghcheh, R., Bok, J. W., Phatale, P., Smith, K. M., Baker, S. E., Lichius, A., Omann, M., Zeilinger, S., Seiboth, B., Rhee, C., Keller, N. P., Freitag, M., & Kubicek, C. P. (2013). Functional Analyses of Trichoderma reesei LAE1 Reveal Conserved and Contrasting Roles of This Regulator. G3: Genes | Genomes | Genetics, 3(2), 369–378. https://doi.org/10.1534/g3.112.005140 ( reposiTUm)

Atanasova, L., Crom, S. L., Gruber, S., Coulpier, F., Seidl-Seiboth, V., Kubicek, C. P., & Druzhinina, I. S. (2013). Comparative transcriptomics reveals different strategies of Trichoderma mycoparasitism. BMC Genomics, 14(121). https://doi.org/10.1186/1471-2164-14-121 ( reposiTUm)

Aghcheh, R. K., Druzhinina, I. S., & Kubicek, C. P. (2013). The Putative Protein Methyltransferase LAE1 of Trichoderma atroviride Is a Key Regulator of Asexual Development and Mycoparasitism. PLoS ONE, 8(6), e67144. https://doi.org/10.1371/journal.pone.0067144 ( reposiTUm)

Espino Tenorio de Rammer, L., Ribitsch, D., Przylucka, A., Marold, A., Greimel, K. J., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2013). Two Novel Class II Hydrophobins from Trichoderma spp. Stimulate Ezymatic Hydrolysis of Poly(Ethylene Terephthalate) when Expressed as Fusion Proteins. Applied and Environmental Microbiology, 79(14), 4230–4238. http://hdl.handle.net/20.500.12708/155168 ( reposiTUm)

Lichius, A., Seidl-Seiboth, V., Seiboth, B., & Kubicek, C. P. (2013). Nucleo-cytoplasmic shuttling dynamics of the transcriptional regulators XYR1 and CRE1 under conditions of cellulase and xylanase gene expression in Trichoderma reesei. Acta Microbiologica et Immunologica Hungarica, 60(Supplement), 179. http://hdl.handle.net/20.500.12708/155390 ( reposiTUm)

Seiboth, B., Ivanova, C., Baath, J. A., & Kubicek, C. P. (2013). Systems analysis of lactose metabolism in Trichoderma reesei. Acta Microbiologica et Immunologica Hungarica, 60(Supplement), 78–79. http://hdl.handle.net/20.500.12708/155385 ( reposiTUm)

Kubicek, C. P. (2013). Systems biological approaches towards understanding cellulase production by Trichoderma reesei. Journal of Biotechnology, 163(2), 133–142. https://doi.org/10.1016/j.jbiotec.2012.05.020 ( reposiTUm)

Metz, B., Mojzita, D., Herold, S., Kubicek, C. P., Richard, P., & Seiboth, B. (2013). A novel L-xylulose reductase essential for L-arabinose catabolism in Trichoderma reesei. ADVANCES IN CARBOHYDRATE CHEMISTRY AND BIOCHEMISTRY, 52(14), 2453–2460. https://doi.org/10.1021/bi301583u ( reposiTUm)

Ivanova, C., Bååth, J. A., Seiboth, B., & Kubicek, C. P. (2013). Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction. PLoS ONE, 8(5), e62631. https://doi.org/10.1371/journal.pone.0062631 ( reposiTUm)

Bischof, R., Fourtis, L., Limbeck, A., Gamauf, C., Seiboth, B., & Kubicek, C. P. (2013). Comparative analysis of the Trichoderma reesei transcriptome during growth on the cellulase inducing substrates wheat straw and lactose. Biotechnology for Biofuels, 6(127). https://doi.org/10.1186/1754-6834-6-127 ( reposiTUm)

Fekete, E., De Vries, R., Seiboth, B., vanKuyk, P., Sandor, E., Fekete, E., Metz, B., Kubicek, C. P., & Karaffa, L. (2012). D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger. FEMS Microbiology Letters, 329(2), 198–203. https://doi.org/10.1111/j.1574-6968.2012.02524.x ( reposiTUm)

Fekete, E., Karaffa, L., Seiboth, B., Fekete, E., Kubicek, C. P., & Flipphi, M. (2012). Identification of a permease gene involved in lactose utilisation in Aspergillus nidulans. Fungal Genetics and Biology, 49(6), 415–425. https://doi.org/10.1016/j.fgb.2012.03.001 ( reposiTUm)

Marchetti-Deschmann, M., Winkler, W., Dong, H., Lohninger, J., Kubicek, C. P., & Allmaier, G. (2012). Using Spores for Fusarium spp. Classification by MALDI-Based Intact Cell/Spore Mass Spectrometry. Food Technology and Biotechnology, 50(3), 334–342. http://hdl.handle.net/20.500.12708/164892 ( reposiTUm)

Druzhinina, I., Komon-Zelazowska, M., Ismaiel, A., Jaklitsch, W. M., Mullaw, T., Samuels, G. J., & Kubicek, C. P. (2012). Molecular phylogeny and species delimitation in the section Longibrachiatum of Trichoderma. Fungal Genetics and Biology, 49(5), 358–368. https://doi.org/10.1016/j.fgb.2012.02.004 ( reposiTUm)

Seiboth, B., Karimi Aghcheh, R., Phatale, P., Linke, R., Hartl, L., Sauer, D. G., Smith, K. M., Baker, S. E., Freitag, M., & Kubicek, C. P. (2012). The putative protein methyltransferase LAE1 controls cellulase gene expression in Trichoderma reesei. Molecular Microbiology, 84(6), 1150–1164. http://hdl.handle.net/20.500.12708/163783 ( reposiTUm)

Baker, S. E., Perrone, G., Richardson, N. M., Gallo, A., & Kubicek, C. P. (2012). Phylogenomic analysis of polyketide synthase-encoding genes in Trichoderma. MICROBIOLOGY-SGM, 158(1), 147–154. https://doi.org/10.1099/mic.0.053462-0 ( reposiTUm)

Fernandez-Fueyo, E., Ruiz-Duenas, F., Ferreira, P., Floudas, D., Hibbett, D., Canessa, P., Larrondo, L. F., James, T. Y., Seelenfreund, D., Lobos, S., Polanco, R., Tello, M., Kubicek, C. P., & Schmoll, M. (2012). Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proceedings of the National Academy of Sciences of the United States of America, 109(14), 5458–5463. http://hdl.handle.net/20.500.12708/164231 ( reposiTUm)

Druzhinina, I. S., Shelest, E., & Kubicek, C. P. (2012). Novel traits of Trichoderma predicted through the analysis of its secretome. FEMS Microbiology Letters, 337(1), 1–9. https://doi.org/10.1111/j.1574-6968.2012.02665.x ( reposiTUm)

Schuster, A., Bruno, K. S., Collett, J. R., Baker, S. E., Seiboth, B., Kubicek, C. P., & Schmoll, M. (2012). A versatile toolkit for high throughput functional genomics with Trichoderma reesei. Biotechnology for Biofuels, 5(1). https://doi.org/10.1186/1754-6834-5-1 ( reposiTUm)

Samuels, G. J., Ismaiel, A., Mulaw, T. B., Szakacs, G., Druzhinina, I. S., Kubicek, C. P., & Jaklitsch, W. M. (2012). The Longibrachiatum Clade of Trichoderma : a revision with new species. Fungal Diversity, 55(1), 77–108. https://doi.org/10.1007/s13225-012-0152-2 ( reposiTUm)

Uzbas, F., Sezerman, U., Hartl, L., Kubicek, C. P., & Seiboth, B. (2012). A homologous production system for Trichoderma reesei secreted proteins in a cellulase-free background. Applied Microbiology and Biotechnology, 93(4), 1601–1608. https://doi.org/10.1007/s00253-011-3674-8 ( reposiTUm)

Degenkolb, T., Karimi Aghcheh, R., Dieckmann, R., Neuhof, T., Baker, S. E., Druzhinina, I., Kubicek, C. P., Brückner, H., & von Döhren, H. (2012). The Production of Multiple Small Peptaibol Families by Single 14-Module Peptide Synthetases in Trichoderma/Hypocrea. CHEMISTRY & BIODIVERSITY, 9(3), 499–535. http://hdl.handle.net/20.500.12708/163528 ( reposiTUm)

Wang, L.-W., Xu, B.-G., Wang, J.-Y., Su, Z.-Z., Lin, F.-C., Zhang, C.-L., & Kubicek, C. P. (2012). Bioactive metabolites from Phoma species, an endophytic fungus from the Chinese medicinal plant Arisaema erubescens. Applied Microbiology and Biotechnology, 93(3), 1231–1239. https://doi.org/10.1007/s00253-011-3472-3 ( reposiTUm)

Fekete, E., Karaffa, L., Fekete, E., Szentirmai, A., Seiboth, B., Kubicek, C. P., & Flipphi, M. (2011). Identification of a Beta-galactosidase/lactose permease gene couple and the characterisaton of lactose transport in Aspergillus nidulans. Acta Microbiologica et Immunologica Hungarica, 58(Supplement), 142–143. http://hdl.handle.net/20.500.12708/165047 ( reposiTUm)

Portnoy, T., Margeot, A., Seidl-Seiboth, V., Le Crom, S., Ben Chaabane, F., Linke, R., Seiboth, B., & Kubicek, C. P. (2011). Differential Regulation of the Cellulase Transcription Factors XYR1, ACE2, and ACE1 in Trichoderma reesei Strains Producing High and Low Levels of Cellulase. Eukaryotic Cell, 10(2), 262–271. http://hdl.handle.net/20.500.12708/163041 ( reposiTUm)

Tisch, D., Kubicek, C. P., & Schmoll, M. (2011). The phosducin-like protein PhLP1 impacts regulation of glycoside hydrolases and light response in Trichoderma reesei. BMC Genomics, 12(613). https://doi.org/10.1186/1471-2164-12-613 ( reposiTUm)

Catalano, V., Vergara, M., Hauzenberger, J. R., Seiboth, B., Sarrocco, S., Vannacci, G., Kubicek, C. P., & Seidl-Seiboth, V. (2011). Use of a non-homologous end-joining-deficient strain (delta-ku70) of the biocontrol fungus Trichoderma virens to investigate the function of the laccase gene lcc1 in sclerotia degradation. Current Genetics, 57(1), 13–23. https://doi.org/10.1007/s00294-010-0322-2 ( reposiTUm)

Gruber, S. G., Kubicek, C. P., & Seidl-Seiboth, V. (2011). Differential Regulation of Orthologous Chitinase Genes in Mycoparasitic Tricoderma Species. Applied and Environmental Microbiology, 77(20), 7217–7226. http://hdl.handle.net/20.500.12708/162710 ( reposiTUm)

Metz, B., Seidl-Seiboth, V., Haarmann, T., Kopchinskiy, A., Lorenz, P., Seiboth, B., & Kubicek, C. P. (2011). Expression of Biomass-Degrading Enzymes Is a Major Event during Conidium Development in Trichoderma reesei. Eukaryotic Cell, 10(11), 1527–1535. http://hdl.handle.net/20.500.12708/162786 ( reposiTUm)

Tisch, D., Kubicek, C. P., & Schmoll, M. (2011). New insights into the mechanism of light modulated signaling by heterotrimeric G-proteins : ENVOY acts on gna1 and gna3 and adjusts cAMP levels in Trichoderma reesei (Hypocrea jecorina). Fungal Genetics and Biology, 48(6), 631–640. https://doi.org/10.1016/j.fgb.2010.12.009 ( reposiTUm)

Schuster, A., Kubicek, C. P., & Schmoll, M. (2011). Dehydrogenase GRD1 Represents a Novel Component of the Cellulase Regulon in Trichoderma reesei (Hypocrea jecorina). Applied and Environmental Microbiology, 77(13), 4553–4563. http://hdl.handle.net/20.500.12708/162738 ( reposiTUm)

Kubicek, C. P., Herrera-Estrella, A., Seidl-Seiboth, V., Martinez, D. A., Druzhinina, I., Thon, M., Zeilinger, S., Casas-Flores, S., Horwitz, B. A., Mukherjee, P. K., Mukherjee, M., Kredics, L., Alcaraz, L. D., Aerts, A., Antal, Z., Atanasova, L., Cervantes-Badillo, M. G., Challacombe, J., Chertkov, O., … Grigoriev, I. V. (2011). Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology, 12, Article R40. https://doi.org/10.1186/gb-2011-12-4-r40 ( reposiTUm)

Druzhinina, I. S., Seidl-Seiboth, V., Herrera-Estrella, A., Horwitz, B. A., Kenerley, C. M., Monte, E., Mukherjee, P. K., Zeilinger, S., Grigoriev, I. V., & Kubicek, C. P. (2011). Trichoderma : the genomics of opportunistic success. Nature Reviews Microbiology, 9(10), 749–759. https://doi.org/10.1038/nrmicro2637 ( reposiTUm)

Seidl-Seiboth, V., Gruber, S., Sezerman, U., Schwecke, T., Albayrak, A., Neuhof, T., von Döhren, H., Baker, S. E., & Kubicek, C. P. (2011). Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass : Protein Properties, Evolution, Regulation and Processing. Journal of Molecular Evolution, 72(4), 339–351. https://doi.org/10.1007/s00239-011-9438-3 ( reposiTUm)

Gruber, S., Vaaje-Kolstad, G., Matarese, F., López-Mondéjar, R., Kubicek, C. P., & Seidl-Seiboth, V. (2011). Analysis of subgroup C of fungal chitinases containing chitin-binding and LysM modules in the mycoparasite Trichoderma atroviride. Glycobiology, 21(1), 122–133. https://doi.org/10.1093/glycob/cwq142 ( reposiTUm)

Andersen, M. R., Salazar, M. P., Schaap, P. J., van de Vondervoort, P. J. I., Culley, D., Thykaer, J., Frisvad, J. C., Nielsen, K. F., Albang, R., Albermann, K., Berka, R. M., Braus, G., Braus-Stromeyer, S. A., Corrochano, L. M., Dai, Z., van Dijck, P. W. M., Hofmann, G., Lasure, L. L., Magnuson, J. K., … Baker, S. E. (2011). Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Research, 21(6), 885–897. https://doi.org/10.1101/gr.112169.110 ( reposiTUm)

Portnoy, T., Margeot, A., Linke, R., Atanasova, L., Fekete, E., Sándor, E., Hartl, L., Karaffa, L., Druzhinina, I. S., Seiboth, B., Le Crom, S., & Kubicek, C. P. (2011). The CRE1 carbon catabolite repressor of the fungus Trichoderma reesei : a master regulator of carbon assimilation. BMC Genomics, 12(269). https://doi.org/10.1186/1471-2164-12-269 ( reposiTUm)

Schmoll, M., Seibel, C., Kotlowski, C., Wöllert Genannt Vendt, F., Liebmann, B., & Kubicek, C. P. (2010). Recombinant production of an Aspergillus nidulans class I hydrophobin (DewA) in Hypocrea jecorina (Trichoderma reesei) is promoter-dependent. Applied Microbiology and Biotechnology, 88(1), 95–103. https://doi.org/10.1007/s00253-010-2710-4 ( reposiTUm)

Belayneh Mulaw, T., Kubicek, C., & Druzhinina, I. (2010). The Rhizosphere of Coffea Arabica in Its Native Highland Forests of Ethiopia Provides a Niche for a Distinguished Diversity of Trichoderma. Diversity, 2(4), 527–549. https://doi.org/10.3390/d2040527 ( reposiTUm)

Druzhinina, I. S., Kubicek, C. P., Komon-Zelazowska, M., Belayneh Mulaw, T., & Bissett, J. (2010). The Trichoderma harzianum demon : complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages. BMC Evolutionary Biology, 10(1), 94. https://doi.org/10.1186/1471-2148-10-94 ( reposiTUm)

Druzhinina, I. S., Komoń-Zelazowska, M., Atanasova, L., Seidl, V., & Kubicek, C. P. (2010). Evolution and Ecophysiology of the Industrial Producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a New Sympatric Agamospecies Related to It. PLoS ONE, 5(2), e9191. https://doi.org/10.1371/journal.pone.0009191 ( reposiTUm)

Castellanos, F., Schmoll, M., Martínez, P., Tisch, D., Kubicek, C. P., Herrera-Estrella, A., & Esquivel-Naranjo, E. U. (2010). Crucial factors of the light perception machinery and their impact on growth and cellulase gene transcription in Trichoderma reesei. Fungal Genetics and Biology, 47(5), 468–476. https://doi.org/10.1016/j.fgb.2010.02.001 ( reposiTUm)

Zhang, C.-L., Wang, G.-P., Mao, L.-J., Komon-Zelazowska, M., Yuan, Z.-L., Lin, F.-C., Druzhinina, I. S., & Kubicek, C. P. (2010). Muscodor fengyangensis sp.nov. from southeast China : morphology, physiology and production of volatile compounds. Fungal Biology, 114(10), 797–808. https://doi.org/10.1016/j.funbio.2010.07.006 ( reposiTUm)

Atanasova, L., Jaklitsch, W. M., Komoń-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. S. (2010). Clonal Species Trichoderma parareesei sp. nov. Likely Resembles the Ancestor of the Cellulase Producer Hypocrea jecorina/T.reesei. Applied and Environmental Microbiology, 76(21), 7259–7267. https://doi.org/10.1128/aem.01184-10 ( reposiTUm)

Schmoll, M., Seibel, C., Tisch, D., Dorrer, M., & Kubicek, C. P. (2010). A novel class of peptide pheromone precursors in ascomycetous fungi. Molecular Microbiology, 77(6), 1483–1501. https://doi.org/10.1111/j.1365-2958.2010.07295.x ( reposiTUm)

Seidl, V., Seibel, C., Kubicek, C. P., & Schmoll, M. (2009). Sexual development in the industrial workhorse Trichoderma reesei. Proceedings of the National Academy of Sciences, 106(33), 13909–13914. https://doi.org/10.1073/pnas.0904936106 ( reposiTUm)

Seidl, V., Song, L., Lindquist, E., Gruber, S. G., Koptchinskiy, A., Zeilinger, S., Schmoll, M., Martínez, P., Sun, J., Grigoriev, I., Herrera-Estrella, A., Baker, S. E., & Kubicek, C. P. (2009). Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey. BMC Genomics, 10(567). https://doi.org/10.1186/1471-2164-10-567 ( reposiTUm)

Mikus, M., Hatvani, L., Neuhof, T., Komoń-Zelazowska, M., Dieckmann, R., Schwecke, T., Druzhinina, I. S., von Döhren, H., & Kubicek, C. P. (2009). Differential Regulation and Posttranslational Processing of the Class II Hydrophobin Genes from the Biocontrol Fungus Hypocrea atroviridis. Applied and Environmental Microbiology, 75(10), 3222–3229. https://doi.org/10.1128/aem.01764-08 ( reposiTUm)

López-Mondéjar, R., Catalano, V., Kubicek, C. P., & Seidl, V. (2009). The β-N-acetylglucosaminidases NAG1 and NAG2 are essential for growth of Trichoderma atroviride on chitin. The FEBS Journal, 276(18), 5137–5148. https://doi.org/10.1111/j.1742-4658.2009.07211.x ( reposiTUm)

Dong, H., Kemptner, J., Marchetti-Deschmann, M., Kubicek, C. P., & Allmaier, G. (2009). Development of a MALDI two-layer volume sample preparation technique for analysis of colored conidia spores of Fusarium by MALDI linear TOF mass spectrometry. Analytical and Bioanalytical Chemistry, 391, 1373–1383. http://hdl.handle.net/20.500.12708/166590 ( reposiTUm)

Kemptner, J., Marchetti-Deschmann, M., Kubicek, C. P., & Allmaier, G. (2009). Mixed volume sample preparation method for intact cell mass spectrometry of Fusarium spores. Journal of Mass Spectrometry, 44, 1622–1624. http://hdl.handle.net/20.500.12708/166592 ( reposiTUm)

Le Crom, S., Schackwitz, W., Pennacchio, L., Magnuson, J. K., Culley, D. E., Collett, J. R., Martin, J., Druzhinina, I. S., Mathis, H., Monot, F., Seiboth, B., Cherry, B., Rey, M., Berka, R., Kubicek, C. P., Baker, S. E., & Margeot, A. (2009). Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proceedings of the National Academy of Sciences, 106(38), 16151–16156. https://doi.org/10.1073/pnas.0905848106 ( reposiTUm)

Kubicek, C. P., Mikus, M., Schuster, A., Schmoll, M., & Seiboth, B. (2009). Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina. Biotechnology for Biofuels, 2(1), 19. https://doi.org/10.1186/1754-6834-2-19 ( reposiTUm)

Wortman, J., Gilsenan, J., Joardar, V., Deegan, J., Clutterbuck, J., Andersen, M. R., Archer, D., Bencina, M., Braus, G., Coutinho, P., von Döhren, H., Doonan, J., Driessen, A. J. M., Durek, P., Espeso, E. A., Fekete, E., Flipphi, M., Garcia-Estrada, C., Geysens, S., … Turner, G. (2009). The 2008 update of the Aspergillus nidulans genome annotation : A community effort. Fungal Genetics and Biology, 46(1), S2–S13. https://doi.org/10.1016/j.fgb.2008.12.003 ( reposiTUm)

Akel, E., Metz, B., Seiboth, B., & Kubicek, C. P. (2009). Molecular Regulation of Arabinan and L-Arabinose Metabolism in Hypocrea jecorina (Trichoderma reesei). Eukaryotic Cell, 8(12), 1837–1844. https://doi.org/10.1128/ec.00162-09 ( reposiTUm)

Migheli, Q., Balmas, V., Komoñ-Zelazowska, M., Scherm, B., Fiori, S., Kopchinskiy, A. G., Kubicek, C. P., & Druzhinina, I. S. (2009). Soils of a Mediterranean hot spot of biodiversity and endemism (Sardinia, Tyrrhenian Islands) are inhabited by pan-European, invasive species of Hypocrea/Trichoderma. Environmental Microbiology, 11(1), 35–46. https://doi.org/10.1111/j.1462-2920.2008.01736.x ( reposiTUm)

Zachow, C., Berg, C., Müller, H., Meincke, R., Komon-Zelazowska, M., Druzhinina, I. S., Kubicek, C. P., & Berg, G. (2009). Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands) : relationship to vegetation zones and environmental factors. The ISME Journal: Multidisciplinary Journal of Microbial Ecology, 3(1), 79–92. https://doi.org/10.1038/ismej.2008.87 ( reposiTUm)

Schmoll, M., Schuster, A., Silva, R. do N., & Kubicek, C. P. (2009). The G-Alpha Protein GNA3 of Hypocrea jecorina (Anamorph Trichoderma reesei) Regulates Cellulase Gene Expression in the Presence of Light. Eukaryotic Cell, 8(3), 410–420. https://doi.org/10.1128/ec.00256-08 ( reposiTUm)

Martinez, D. A., Challacombe, J., Morgenstern, I., Hibbett, D., Schmoll, M., Kubicek, C. P., Ferreira, P., Ruiz-Duenas, F., Martinez, A. T., Kersten, P., Hammel, K. E., Wymelenberg, A. V., Gaskell, J., Lindquist, E., Sabat, G., BonDurant, S. S., Larrondo, L. F., Canessa, P., Vicuna, R., & Cullen, D. (2009). Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences, 106(6), 1954–1959. https://doi.org/10.1073/pnas.0809575106 ( reposiTUm)

Scherm, B., Schmoll, M., Balmas, V., Kubicek, C. P., & Migheli, Q. (2009). Identification of potential marker genes for Trichoderma harzianum strains with high antagonistic potential against Rhizoctonia solani by a rapid subtraction hybridization approach. Current Genetics, 55(1), 81–91. https://doi.org/10.1007/s00294-008-0226-6 ( reposiTUm)

Flipphi, M., Sun, J., Robellet, X., Karaffa, L., Fekete, E., Zeng, A.-P., & Kubicek, C. P. (2009). Biodiversity and evolution of primary carbon metabolism in Aspergillus nidulans and other Aspergillus spp. Fungal Genetics and Biology, 46(1), S19–S44. https://doi.org/10.1016/j.fgb.2008.07.018 ( reposiTUm)

Kemptner, J., Marchetti-Deschmann, M., Mach, R., Druzhinina, I. S., Kubicek, C. P., & Allmaier, G. (2009). Evaluation of matrix-assisted laser desorption/ionization (MALDI) preparation techniques for surface characterization of intact Fusarium spores by MALDI linear time-of-flight mass spectrometry. Rapid Communications in Mass Spectrometry, 23(6), 877–884. https://doi.org/10.1002/rcm.3949 ( reposiTUm)

Kredics, L., Kocsubé, S., Nagy, L., Komon-Zelazowska, M., Manczinger, L., Sajben, E., Nagy, A., Vágvölgyi, C., Kubicek, C. P., Druzhinina, I., & Hatvani, L. (2009). Molecular identification of Trichoderma species associated with Pleurotus ostreatus and natural substrates of the oyster mushroom. FEMS Microbiology Letters, 300(1), 58–67. https://doi.org/10.1111/j.1574-6968.2009.01765.x ( reposiTUm)

Seibel, C., Gremel, G., do Nascimento Silva, R., Schuster, A., Kubicek, C. P., & Schmoll, M. (2009). Light-dependent roles of the G-protein α subunit GNAI of Hypocrea jecorina (anamorph Trichoderma reesei). BMC Biology, 7(58). https://doi.org/10.1186/1741-7007-7-58 ( reposiTUm)

Martinez, D. A., Berka, R. M., Henrissat, B., Saloheimo, M., Arvas, M., Baker, S. E., Chapman, J., Chertkov, O., Coutinho, P., Cullen, D., Danchin, E., Grigoriev, I., Harris, P., Jackson, M., Kubicek, C. P., Han, C., Ho, I., Larondo, L., Lopez de Leon, A., … Brettin, T. (2008). Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nature Biotechnology, 26(5), 553–560. http://hdl.handle.net/20.500.12708/170921 ( reposiTUm)

Druzhinina, I., Komon-Zelazowska, M., Kredics, L., Hatvani, L., Antal, Z., Belayneh, T., & Kubicek, C. P. (2008). Alternative reproductive strategies of Hypocrea orientalis and genetically close but clonal Trichoderma longibrachiatum, both capable of causing mycoses of humans. Microbiology, 154, 3447–3459. http://hdl.handle.net/20.500.12708/170940 ( reposiTUm)

Friedl, M., Schmoll, M., Kubicek, C. P., & Druzhinina, I. (2008). Photosimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress. Microbiology, 154, 1229–1241. http://hdl.handle.net/20.500.12708/170922 ( reposiTUm)

Friedl, M., Kubicek, C. P., & Druzhinina, I. (2008). Carbon Source Dependence and Photosimulation of Conidiation in Hypocrea atroviridis. Applied and Environmental Microbiology, 74, 245–250. http://hdl.handle.net/20.500.12708/170923 ( reposiTUm)

Kubicek, C. P., Komon-Zelazowska, M., & Druzhinina, I. (2008). Fungal genus Hypocrea/Trichoderma : from barcodes to biodiversity. Journal of Zheijang University SCIENCE B - Biomedicine & Biotechnology, 9, 753–763. http://hdl.handle.net/20.500.12708/170927 ( reposiTUm)

Fekete, E., Seiboth, B., Kubicek, C. P., Szentirmai, A., & Karaffa, L. (2008). Lack of aldose 1-epimerase in Hypocrea jecorina (anamorph Trichoderma reesei) : A key to cellulase gene expression on lactose. Proceedings of the National Academy of Sciences, 105(20), 7141–7146. http://hdl.handle.net/20.500.12708/170942 ( reposiTUm)

Jaklitsch, W. M., Kubicek, C. P., & Druzhinina, I. (2008). Three European species of Hypocrea with reddish brown stromata and green ascospores. Mycologia, 100, 796–815. http://hdl.handle.net/20.500.12708/170935 ( reposiTUm)

Vàczy, K. Z., Sandor, E., Karaffa, L., Fekete, E., Fekete, E., Arnyasi, M., Czegledi, L., Kövics, G. J., Druzhinina, I., & Kubicek, C. P. (2008). Sexual Recombination in the Botrytis cinerea Populations in Hungarian Vineyards. Phytopathology, 98, 1312–1319. http://hdl.handle.net/20.500.12708/170934 ( reposiTUm)

Zhang, C.-L., Zheng, B.-Q., Lao, J.-P., Mao, L.-J., Chen, S.-Y., Kubicek, C. P., & Lin, F.-C. (2008). Clavatol and patulin formation as the antagonistic principle of Aspergillus clavatonanicus an endophytic fungus of Taxus mairei. Applied Microbiology and Biotechnology, 78, 833–840. http://hdl.handle.net/20.500.12708/171109 ( reposiTUm)

Kubicek, C. P., Baker, S. E., Gamauf, C., Kenerley, C., & Druzhinina, I. (2008). Purifying selection and birth-and-death evolution in the class II hydrophobin gene families of the ascomycete Trichoderma/Hypocrea. BMC Evolutionary Biology, 8, 1–16. http://hdl.handle.net/20.500.12708/170915 ( reposiTUm)

Seidl, V., Gamauf, C., Druzhinina, I., Seiboth, B., Hartl, L., & Kubicek, C. P. (2008). The Hypocrea jecorina (Trichoderma reesei) hypercellulolytic mutant RUT C30 lacks a 85 kb (29 gene-encoding) region of the wild-type genome. BMC Genomics, 9, 1–15. http://hdl.handle.net/20.500.12708/170924 ( reposiTUm)

Hatvani, L., Antal, Z., Manczinger, L., Szekeres, A., Druzhinina, I., Kubicek, C. P., Nagy, A., Nagy, E., Vágvölgyi, C., & Kredics, L. (2007). Green Mold Diseases of Agaricus and Pleurotus are Caused by Related but Phylogenetically Different Trichoderma Species. Journal of Phytopathology, 97, 532–537. http://hdl.handle.net/20.500.12708/169372 ( reposiTUm)

Zhang, C.-L., Liu, S.-P., Lin, F.-C., Kubicek, C. P., & Druzhinina, I. (2007). Trichoderma taxi sp. nov., an endophytic fungus from Chinese yew Taxus mairei, emphasizes the difficulties to phylogenetically align new species within Trichoderma/Hypocrea. FEMS Microbiology Letters, 270, 90–96. http://hdl.handle.net/20.500.12708/169373 ( reposiTUm)

Seiboth, B., Pakdaman, B. S., Hartl, L., & Kubicek, C. P. (2007). Lactose metabolism in filamentous fungi: how to deal with an unknown substrate. Fungal Biology Reviews, 21, 42–48. http://hdl.handle.net/20.500.12708/169377 ( reposiTUm)

Pel, H. J., de Winde, J. H., Archer, D., Dyer, P. S., Hofmann, G., Schaap, P. J., Turner, G., De Vries, R., Albang, R., Albermann, K., Andersen, M. R., Bendtsen, J. D., Benen, J. A. E., van den Berg, M., Breestraat, S., Caddick, M., Contreras, R., Cornell, M., Coutinho, P., … Stam, H. (2007). Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nature Biotechnology, 25(2), 221–231. https://doi.org/10.1038/nbt1282 ( reposiTUm)

Hartl, L., Kubicek, C. P., & Seiboth, B. (2007). Induction of the Leloir pathway in the fungus Hypocrea jecorina involves no transcriptional inducer function of the galactokinase. Biological Chemistry, 282, 18654–18659. http://hdl.handle.net/20.500.12708/169379 ( reposiTUm)

Fekete, E., Karaffa, L., Kubicek, C. P., Szentirmai, A., & Seiboth, B. (2007). Induction of extracellular ß-galactosidase (Bga1) formation by D-galactose in Hypocrea jecorina is mediated by galactitol. Microbiology, 153, 507–512. http://hdl.handle.net/20.500.12708/169371 ( reposiTUm)

Neuhof, T., Dieckmann, R., Druzhinina, I., Kubicek, C. P., Nakari - Seleta, T., Penttilä, M. E., & von Döhren, H. (2007). Direct identification of hydrophobins and their processing in Trichoderma using Intact-Cell MALDI-TOF mass spectrometry. The FEBS Journal, 274, 841–852. http://hdl.handle.net/20.500.12708/169375 ( reposiTUm)

Kubicek, C. P., Komon-Zelazowska, M., Sandor, E., & Druzhinina, I. (2007). Facts and challenges in the understanding of the biosynthesis of peptaibols by Trichoderma. Chemistry and Biodiversity, 4, 1068–1082. http://hdl.handle.net/20.500.12708/169376 ( reposiTUm)

Nagy, V., Seidl, V., Szakacs, G., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2007). Application of DNA BarCodes for screening of industrially important fungi: the haplotype of Trichoderma harzianum sensu stricto indicates superior chitinase formation. Applied and Environmental Microbiology, 73, 7048–7058. http://hdl.handle.net/20.500.12708/169382 ( reposiTUm)

Komon-Zelazowska, M., Bisset, J., Zafari, D., Hatvani, L., Manczinger, L., Woo, S. L., Lorito, M., Kredics, L., Kubicek, C. P., & Druzhinina, I. (2007). Genetically closely related but phenotypically divergent Trichoderma species cause world-wide green mould disease in oyster mushroom farms. Applied and Environmental Microbiology, 73, 7415–7426. http://hdl.handle.net/20.500.12708/169383 ( reposiTUm)

Neuhof, T., Dieckmann, R., Druzhinina, I., Kubicek, C. P., & von Döhren, H. (2007). Intact-Cell MALDI-TOF mass spectrometry analysis of peptaibol formation by the genus Trichoderma: can molecular phylogenic knowledge predict peptaibol structures ? Microbiology, 153, 3417–3437. http://hdl.handle.net/20.500.12708/169380 ( reposiTUm)

Schuster, A., Kubicek, C. P., Friedl, M. A., Druzhinina, I. S., & Schmoll, M. (2007). Impact of light on Hypocrea jecorina and the multiple cellular roles of ENVOY in this process. BMC Genomics, 8(449). https://doi.org/10.1186/1471-2164-8-449 ( reposiTUm)

Hatvani, L., Antal, Z., Manczinger, L., Druzhinina, I., Kubicek, C. P., Szekeres, A., Vágvölgyi, C., & Kredics, L. (2007). Worldwide Green Mold Disease of the Oyster Mushroom (Pleurotus ostreatus) is caused by Two New Species of Trichoderma, T.fulvidum and T. pleurotophilum. International Journal of Medicinal Mushrooms, 9(3 & amp;4), 241–242. http://hdl.handle.net/20.500.12708/169508 ( reposiTUm)

Hatvani, L., Kocsubè, L., Manczinger, L., Druzhinina, I., Kubicek, C. P., Vágvölgyi, C., & Kredics, L. (2007). A PCR-Based Test for the Rapid Detection of Trichoderma pleurotophilum and T. fulvidum, the Causative Agents of the Newly Emerged Worldwide Green Mold Disease of Pleurotus ostreatus. International Journal of Medicinal Mushrooms, 9(3 & amp; 4), 309–310. http://hdl.handle.net/20.500.12708/169509 ( reposiTUm)

Gamauf, C., Marchetti, M., Kallio, J., Puranen, T., Vehmaanperä, J., Allmaier, G., Kubicek, P. C., & Seiboth, B. (2007). Characterization of the bga1- encoded glycosyl hydrolase family 35 β-galactosidase of Hypocrea jecorina with galacto-β-ᴅ-galactanase activity. FEBS Journal, 274(7), 1691–1700. https://doi.org/10.1111/j.1742-4658.2007.05714.x ( reposiTUm)

Seiboth, B., Gamauf, C., Pail, M., Hartl, L., & Kubicek, C. P. (2007). The major D-xylose reductase of Hypocrea jecorina is necessary for efficient pentose and lactose catabolism and for cellulase induction by lactose. Molecular Microbiology, 66, 890–900. http://hdl.handle.net/20.500.12708/169381 ( reposiTUm)

Dela Cruz, T. E., Schulz, B., Kubicek, C. P., & Druzhinina, I. (2006). Carbon Source Utilization by the Marine Dendryphiella species D.arenaria D.salina. FEMS Microbiology Ecology, 59, 343–353. http://hdl.handle.net/20.500.12708/173227 ( reposiTUm)

Rauscher, R., Würleitner, E., Wacenovsky, C., Aro, N., Stricker, A. R., Zeilinger, S., Kubicek, C. P., Penttilä, M. E., & Mach, R. L. (2006). Transciptional Regulation of xyn1, Encoding Xylanase I, in Hypocrea jecorina. Eukaryotic Cell, 5(7), 447–456. http://hdl.handle.net/20.500.12708/173250 ( reposiTUm)

Druzhinina, I., Schmoll, M., Seiboth, B., & Kubicek, C. P. (2006). Global Carbon Utilization Profiles of Wild Type, Mutant and Transformant Strains of Hypocrea jecorina. Applied and Environmental Microbiology, 72(3), 2126–2132. http://hdl.handle.net/20.500.12708/173230 ( reposiTUm)

Jaklitsch, W. M., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). Hypocrea crystalligena sp.nov., a common European species with a white-spored Trichoderma anamorph. Mycologia, 98(3), 499–513. http://hdl.handle.net/20.500.12708/173228 ( reposiTUm)

Druzhinina, I., Kopchinski, A., & Kubicek, C. P. (2006). The first 100 Trichoderma species is characterized by molecular data. Mycoscience, 47, 55–64. http://hdl.handle.net/20.500.12708/173229 ( reposiTUm)

Seidl, V., Marchetti, M., Schandl, R., Allmaier, G., & Kubicek, C. P. (2006). Epl1, the major secreted protein of Hypocrea atroviridis on glucose, is a member of a strong conserved protein family comparsing plant defense response elicitors. The FEBS Journal, 273, 4346–4359. http://hdl.handle.net/20.500.12708/173217 ( reposiTUm)

Karaffa, L., Fekete, E., Gamauf, C., Szentirmai, A., Kubicek, C. P., & Seiboth, B. (2006). D-Galactose induces cellulase gene expression in Hypocrea jecorina at low growth rates. Microbiology, 152, 1507–1514. http://hdl.handle.net/20.500.12708/173216 ( reposiTUm)

Brunner, K., Zeilinger, S., Ciliento, R., Woo, S. L., Lorito, M., Kubicek, C. P., & Mach, R. L. (2005). Improvement of the Fungal Biocontrol Agent Trichoderma atroviride To Enhance both Antagonism and Induction of Plant Systemic Disease Resistance. Applied and Environmental Microbiology, 71(7), 3959–3965. http://hdl.handle.net/20.500.12708/172914 ( reposiTUm)

Kopchinski, A., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2005). Trichoblast: A Multilocus Database for Trichoderma and Hypocrea Identifications. Mycological Research, 109(6), 658–660. http://hdl.handle.net/20.500.12708/173001 ( reposiTUm)

Zhang, C., Druzhinina, I., Kubicek, C. P., & Xu, T. (2005). Trichoderma biodiversity in China: Evidence for a North to South distribution of species in East Asia. FEMS Microbiology Letters, 251, 251–257. http://hdl.handle.net/20.500.12708/173000 ( reposiTUm)

Schmoll, M., Franchi, L., & Kubicek, C. P. (2005). Envoy, a PAS/LOV Domain Protein of Hypocrea jecorina (Anamorph Trichoderma reesei), Modulates Cellulase Gene Transcription in Response to Light. Eukaryotic Cell, 4(12), 1998–2007. http://hdl.handle.net/20.500.12708/172996 ( reposiTUm)

Schmoll, M., & Kubicek, C. P. (2005). ooc1, a unique gene expressed only during growth of Hypocrea jecorina (anamorph: Trichoderma reesei) on cellulose. Current Genetics, 48, 126–133. http://hdl.handle.net/20.500.12708/172997 ( reposiTUm)

Druzhinina, I., Kopchinski, A., Komon-Zelazowska, M., Bisset, J., Szakacs, G., & Kubicek, C. P. (2005). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. Fungal Genetics and Biology, 42, 813–828. http://hdl.handle.net/20.500.12708/172999 ( reposiTUm)

Druzhinina, I., & Kubicek, C. P. (2005). Species concepts and biodiversity in Trichoderma and Hypocrea: from aggregate species clusters? Journal of Zhejiang University, 6B(2), 100–112. http://hdl.handle.net/20.500.12708/172998 ( reposiTUm)

Seidl, V., Huemer, B., Seiboth, B., & Kubicek, C. P. (2005). A complete survey of Trichoderma chitinases reveals three distinct subgroups of family 18 chitinases. The FEBS Journal, 272, 5923–5939. http://hdl.handle.net/20.500.12708/172994 ( reposiTUm)

Kredics, L., Kratzer, C., Kubicek, P. C., & Schmoll, M. (2005). Application of rapid Subtraction Hybridization for the Study of Opportunistic Pathogenicity Related Gene Expression in Trichoderma Longibrachiatum. Acta Microbiologica et Immunologica Hungarica, 52(Suppl.), 84–85. http://hdl.handle.net/20.500.12708/45333 ( reposiTUm)

Flipphi, M., Fejes, B., Fekete, E., Nguyen, T. T. M., Tsang, A., Kubicek, C. P., & Karaffa, L. (2020). Occurrence, distribution, multiplicity and origins of the divalent metal/proton symporter (NRAMP/DMT) in the Ascomycota. In Program & Abstracts (pp. 388–389). http://hdl.handle.net/20.500.12708/49589 ( reposiTUm)

Karaffa, L., Kollath, lstvan S., Fekete, E., & Kubicek, C. P. (2020). Comparative performance of Aspergillus terreus itaconic acid fermentations on D-xylose and xylitol. In Program & Abstracts (pp. 240–241). http://hdl.handle.net/20.500.12708/49584 ( reposiTUm)

Chenthamara-Kariyankode, K., Steindorff, A. S., Gojic, V., Shelest, E., Grigoriev, I., Kubicek, C. P., & Druzhinina, I. (2019). The comparative genemies of the most common Triehederma species reveals the unique pattern of the ankyrin domain-containing proteins in orphomes of individual Triehederma species. In Abstract Book (p. 1). http://hdl.handle.net/20.500.12708/50423 ( reposiTUm)

Wanka, F., Bischof, R., Metz, B., Gamauf, C., Schirrmacher, G., Kubicek, C. P., & Seiboth, B. (2019). Fine-tuning gene expression: Pantothenic acid inducible promoters in Trichoderma reesei. In The 16#^{th} International Aspergillus Meeting (p. 61). http://hdl.handle.net/20.500.12708/50520 ( reposiTUm)

Wanka, F., Bischof, R., Metz, B., Gamauf, C., Schirmacher, G., Kubicek, C. P., & Seiboth, B. (2019). Fine-tuning gene expression: Pantothenic acid inducible promoters in Trichoderma reesei. In Abstract Book (p. 1). http://hdl.handle.net/20.500.12708/50466 ( reposiTUm)

Bischof, R., Wanka, F., Beinhauer, A., Metz, B., Koger, C., Valentini, I., Steiger, M., Gamauf, C., Schirrmacher, G., Kubicek, C. P., & Seiboth, B. (2017). Carbohydrate- active enzyme independent inducible gene expression in Trichoderma reesei. In Abstracts (p. 51). http://hdl.handle.net/20.500.12708/49933 ( reposiTUm)

Bischof, R., Wanka, F., Beinhauer, A., Metz, B., Koger, C., Steiger, M., Gamauf, C., Schirmacher, G., Kubicek, C. P., & Seiboth, B. (2017). Fine-tuning gene expression: Pantothenic acid inducible promoters in Trichoderma reesei. In Book of Abstracts (p. 135). http://hdl.handle.net/20.500.12708/49972 ( reposiTUm)

Przylucka, A., Akcapinar, G. B., Bonazza, K., Mello de Sousa, T. M., Mach-Aigner, A. R., Reimhult, E., Grothe, H., Kubicek, C. P., & Druzhinina, I. (2017). Expression platforms impact the surface modulating properties of Trichoderma class II hydrophobins. In Abstract Book (p. 113). http://hdl.handle.net/20.500.12708/50025 ( reposiTUm)

Linke, R., Thallinger, G. G., Haarmann, T., Eidner, J., Schreiter, M., Lorenz, P., Kubicek, C. P., & Seiboth, B. (2016). Sexual reproduction in the industrial strain line of Trichoderma reesei QM6a. In Book of Abstracts (p. 14). http://hdl.handle.net/20.500.12708/49243 ( reposiTUm)

Linke, R., Thallinger, G. G., Haarmann, T., Eidner, J., Schreiter, M., Lorenz, P., Kubicek, C. P., & Seiboth, B. (2016). Introduction of a functional ham5 into Trichoderma reesei QM6a restores female fertility and provides the basis for classical strain breeding. In Abstract Book (p. 436). http://hdl.handle.net/20.500.12708/49249 ( reposiTUm)

Druzhinina, I., Atanasova, L., Chenthamara-Kariyankode, K., Grujic, M., Henrissat, B., Zhang, J., Shen, Q., Grigoriev, I., & Kubicek, C. P. (2016). Horizontal gene transfers drove the mycoparasite Trichoderma to adapt to saprotrophy and cellulase production. In Abstract Book (p. 70). http://hdl.handle.net/20.500.12708/49456 ( reposiTUm)

Yang, D., Miao, Y., Kubicek, C. P., Grigoriev, I., Kopchinskiy, A., Zhang, J., Atanasova, L., Zhang, R., Shen, Q., & Druzhinina, I. (2016). trichoCODE : a modal genome annotation pipeline for Trichoderma. In Abstract Book (p. 470). http://hdl.handle.net/20.500.12708/49462 ( reposiTUm)

Bischof, R., Horejs, J., Metz, B., Kubicek, C. P., & Seiboth, B. (2016). Repressible promoters as tools for Trichoderma reesei synthetic biology. In Programme and Abstract Book (p. 78). http://hdl.handle.net/20.500.12708/49352 ( reposiTUm)

Atanasova, L., Dubey, M., Grujic, M., Gudmundsson, M., Druzhinina, I., Sandgren, M., Kubicek, C. P., Funck Jensen, D., & Karlsson, M. (2016). Functional characterization of Clonostachys rosea pectate lyase PEL1 in Trichoderma reesei. In Abstract Book (p. 264). http://hdl.handle.net/20.500.12708/49457 ( reposiTUm)

Karaffa, L., Diaz, R., Papp, B., Fekete, E., Sandor, E., & Kubicek, C. P. (2015). A deficiency of manganese ions in the presence of high sugar concentrations is critical to achieve high itaconic acid yields by Aspergillus terreus. In Abstracts of the 17th International Congress of the Hungarian Society for Microbiology (Vol. 62, pp. 161–162). http://hdl.handle.net/20.500.12708/99690 ( reposiTUm)

Akcapinar, G. B., Przylucka, A., Cai, F., Shen, Q., Kubicek, C. P., & Druzhinina, I. (2015). Modulation of surface properties of materials by engineered hydrophobins for effective biocatalysis. In Biotrans 2015 (p. 559). http://hdl.handle.net/20.500.12708/49150 ( reposiTUm)

Przylucka, A., Akcapinar, G. B., Boraca, M., Kubicek, C. P., & Druzhinina, I. (2015). Hydrophobins of Trichoderma as immobilizers of enzymes on polymeric surfaces for biocatalysis. In Biotrans 2015 (p. 525). http://hdl.handle.net/20.500.12708/49151 ( reposiTUm)

Atanasova, L., Chenthamara-Kariyankode, K., Grujic, M., Aerts, A., Kuo, A., Grigoriev, I., Kubicek, C. P., & Druzhinina, I. (2015). Evolution and diversification of Trichoderma CAZome based on the genome of eight species. In Abstracts Book. EMBO Conference 2015 - Exploring the genomic complexity and diversity of eukaryotes, Sant Feliu de Guixols, Spain. http://hdl.handle.net/20.500.12708/49148 ( reposiTUm)

Yang, D., Kubicek, C. P., Miao, Y., Grigoriev, I., Kopchinskiy, A., Zhang, J., Atanasova, L., Zhang, R., Shen, Q., & Druzhinina, I. (2015). trichoCODE: A modal genome annotation pipeline for Trichoderma. In Abstracts Book. EMBO Conference 2015 - Exploring the genomic complexity and diversity of eukaryotes, Sant Feliu de Guixols, Spain. http://hdl.handle.net/20.500.12708/49149 ( reposiTUm)

Linke, R., Thallinger, G. G., Haarmann, T., Eidner, J., Schreiter, M., Lorenz, P., Kubicek, C. P., & Seiboth, B. (2015). Restoration of female fertility in Trichoderma reesei QM6a provides the basis for inbreeding in this industrial enzyme producer. In 11#^{th} VAAM Conference (p. 158). http://hdl.handle.net/20.500.12708/48964 ( reposiTUm)

Bischof, R., Horejs, J., Metz, B., Gamauf, C., Kubicek, C. P., & Seiboth, B. (2015). Novel repressible promoters for tuneable gene expression in Trichoderma reesei. In 11#^{th} VAAM Conference (p. 166). http://hdl.handle.net/20.500.12708/48965 ( reposiTUm)

Zhang, J., Akcapinar, G. B., Atanasova, L., Rahimi, M., Przylucka, A., Yang, D., Kubicek, C. P., Zhang, R., Shen, Q., & Druzhinina, I. (2015). The M35 neutral metallopeptidase NMP1 of Trichoderma guizhouense is required for predation on Fusarium oxysporum and is involved in biotrophic or antagonistic interactions with some other fungi. In Abstract Book (p. 181). http://hdl.handle.net/20.500.12708/48934 ( reposiTUm)

Druzhinina, I., Yang, D., Kubicek, C. P., Grigoriev, I., Kopchinskiy, A., Zhang, J., Atanasova, L., Zhang, R., & Shen, Q. (2015). trichoCODE: A Modal Genome Annotation Pipeline for Good Fungi from the Genus Trichoderma. In Abstracts (p. 37). http://hdl.handle.net/20.500.12708/48945 ( reposiTUm)

Ghassemi, S., Lichius, A., Seiboth, B., Seidl-Seiboth, V., & Kubicek, C. P. (2014). Nuclear transport and cellulase production in Trichoderma reesei. In Abstract Book (p. 177). http://hdl.handle.net/20.500.12708/48661 ( reposiTUm)

Ramoni, J., Herold, S., Kubicek, C. P., & Seiboth, B. (2014). A genome wide analysis of xylanases in Trichoderma reesei. In Abstract Book (p. 62). http://hdl.handle.net/20.500.12708/48660 ( reposiTUm)

Atanasova, L., Yang, D., Zhang, J., Kopchinskiy, A., Baker, S. E., Grigoriev, I., Kubicek, C. P., & Druzhinina, I. (2014). Genomic portrayal of opportunistic Trichoderma species. In Biology of pathogenic fungi (p. 18). http://hdl.handle.net/20.500.12708/48824 ( reposiTUm)

Bischof, R., Frischmann, A., Ivanova, C., Lichius, A., Kubicek, C. P., & Seiboth, B. (2014). Elucidation of novel targets for Trichoderma reesei strain improvement towards better enzyme production. In 16th European Congress on Biotechnology. ECB 16 - 16th European Congress on Biotechnology, Edinburgh, United Kingdom of Great Britain and Northern Ireland (the). http://hdl.handle.net/20.500.12708/48623 ( reposiTUm)

Karimi Aghcheh, R., Nemeth, Z., Atanasova, L., Ghassemi, S., Aquino, B., Druzhinina, I., Fekete, E., Seiboth, B., Karaffa, L., & Kubicek, C. P. (2014). Vel1 of Trichoderma reesei has an auxiliary role in in cellulase gene expression and is required for sexual and asexual development. In Book of Abstracts (p. 152). http://hdl.handle.net/20.500.12708/48508 ( reposiTUm)

Karimi Aghcheh, R., Bredeweg, E. L., Seiboth, B., Lichius, A., Kubicek, C. P., & Freitag, M. (2014). Heterochromatin protein 1 of Trichoderma reesei is required for transcription of CAZyme genes and conidiation. In Book of Abstracts (p. 208). http://hdl.handle.net/20.500.12708/48509 ( reposiTUm)

Ghassemi, S., Lichius, A., Seidl-Seiboth, V., Seiboth, B., & Kubicek, C. P. (2014). Nuclear transport and cellulase production in Trichoderma reesei. In Book of Abstracts (p. 136). http://hdl.handle.net/20.500.12708/48507 ( reposiTUm)

Przylucka, A., Livoi, M., Espino Tenorio de Rammer, L., Gasser, B., Atanasova, L., Mattanovich, D., Kubicek, C. P., & Druzhinina, I. (2014). Recombinant production of class II hydrophobins from Trichoderma virens by three microbial cell factories. In Book of Abstracts (p. 311). http://hdl.handle.net/20.500.12708/48584 ( reposiTUm)

Zhang, J., Yang, D., Atanasova, L., Zhang, R., Kubicek, C. P., Druzhinina, I., & Shen, Q. (2014). Molecular mechanisms in hyperparasitism of T. guizhouense NJAU 4742 on Fusarium oxysporum f. sp. cubense 4 revealed through the whole genome-wide transcriptional response. In Book of Abstracts (p. 180). http://hdl.handle.net/20.500.12708/48582 ( reposiTUm)

Chenthamara-Kariyankode, K., Atanasova, L., Yang, D., Zhang, J., Kopchinskiy, A., Grigoriev, I., Kubicek, C. P., Shen, Q., & Druzhinina, I. (2014). Phylogenomics of Trichoderma. In Book of Abstracts (p. 184). http://hdl.handle.net/20.500.12708/48581 ( reposiTUm)

Livoi, M., Uzbas, F., Przylucka, A., Atanasova, L., Kubicek, C. P., & Druzhinina, I. (2014). Ecophysiological Roles of the Two Novel Class II Hydrophobins (HFB4 and HFB7) from Trichoderma virens. In Book of Abstracts (p. 118). http://hdl.handle.net/20.500.12708/48580 ( reposiTUm)

Atanasova, L., Grandits, M., Kubicek, C. P., & Druzhinina, I. (2014). Sex modulates long distance dispersal and antagonistic potential of Trichoderma reesei. In Book of Abstracts (p. 289). http://hdl.handle.net/20.500.12708/48583 ( reposiTUm)

Karaffa, L., Coulier, L., Fekete, E., Overkamp, K. M., Druzhinina, I., Mikus, M., Seiboth, B., Novak, L., Punt, P. J., & Kubicek, C. P. (2013). Analysis of the intracellular galactoglycom of Trichoderma reesei grown on lactose. In 27#^{th} Fungal Genetics Conference (p. 78). http://hdl.handle.net/20.500.12708/48174 ( reposiTUm)

Portnoy, T., Bidard-Michelot, F., Seiboth, B., Blanquet, S., Monot, F., Baker, S. E., Kubicek, C. P., Le Crom, S., & Margeot, A. (2013). A genome-wide approach to understand the roots of cellulase hypersecretion in the filamentous fungus Trichoderma reesei. In 34#^{th} SBFC (p. 76). http://hdl.handle.net/20.500.12708/48171 ( reposiTUm)

Ivanova, C., Baath, J. A., Seiboth, B., & Kubicek, C. P. (2013). Identification of a lactose permease of Trichoderma reesei that is required for cellulase gene expression. In 27#^{th} Fungal Genetics Conference (p. 136). http://hdl.handle.net/20.500.12708/48175 ( reposiTUm)

Lichius, A., Kubicek, C. P., & Seidl-Seiboth, V. (2013). Transcription factor shuttling during cellulase induction in Trichoderma reesei. In 27#^{th} Fungal Genetics Conference (p. 63). http://hdl.handle.net/20.500.12708/48288 ( reposiTUm)

Atanasova, L., Chenthamara-Kariyankode, K., Kopchinskiy, A., Baker, S. E., Grigoriev, I., Pomraning, K. R., Freitag, M., Kubicek, C. P., & Druzhinina, I. (2013). A unique genomic architecture of Trichoderma species from Section Longibrachiatum. In Comparative Genomics of Eukaryotic Microorganisms: Complexity Patterns in Eukaryotic Genomes (pp. 83–84). http://hdl.handle.net/20.500.12708/48342 ( reposiTUm)

Chenthamara-Kariyankode, K., Atanasova, L., Zhang, J., Kopchinskiy, A., LaButti, K., Kuo, A., Grigoriev, I., Kubicek, C. P., Shen, Q., & Druzhinina, I. (2013). Phylogenomics of Trichoderma. In Comparative Genomics of Eukaryotic Microorganisms: Complexity Patterns in Eukaryotic Genomes (pp. 90–91). http://hdl.handle.net/20.500.12708/48341 ( reposiTUm)

Druzhinina, I., Kopchinskiy, A., & Kubicek, C. P. (2013). Comparative genomics of Trichoderma: a clue how to become an opportunist. In Comparative Genomics of Eukaryotic Microorganisms: Complexity Patterns in Eukaryotic Genomes (pp. 31–32). http://hdl.handle.net/20.500.12708/48343 ( reposiTUm)

Druzhinina, I., Karimi Aghcheh, R., Atanasova, L., & Kubicek, C. P. (2013). Developmental regulation and cellulase gene expression in Trichoderma reesei. In 27#^{th} Fungal Genetics Conference (p. 61). http://hdl.handle.net/20.500.12708/48221 ( reposiTUm)

Atanasova, L., Knox, B. P., Kubicek, C. P., Baker, S. E., & Druzhinina, I. (2013). The Trichoderma reesei polyketide synthase gene pks1 is necessary for yellow-green pigmentation of conidia an is involved in the establishment of environmental fitness. In 27#^{th} Fungal Genetics Conference (p. 59). http://hdl.handle.net/20.500.12708/48220 ( reposiTUm)

Bischof, R., Fourtis, L., Gamauf, C., Seiboth, B., & Kubicek, C. P. (2013). Differences of the lactose and lignocelluloses induced transcriptome of T. reesei. In PYFF5 Symposium Book (p. 27). http://hdl.handle.net/20.500.12708/48176 ( reposiTUm)

Portnoy, T., Bidard-Michelot, F., Seiboth, B., Monot, F., Baker, S. E., Kubicek, C. P., Le Crom, S., & Margeot, A. (2012). Transcriptomic and Genomic Approaches to Understand Cellulase Hyper-production in the Filamentous Fungus Trichoderma reesei. In Meeting Abstracts (p. 242). http://hdl.handle.net/20.500.12708/47826 ( reposiTUm)

Karimi Aghcheh, R., Phatale, P., Smith, K. M., Baker, S. E., Bok, J. W., Seiboth, B., Keller, N. P., Freitag, M., & Kubicek, C. P. (2012). Genome wide insights into the targets and mechanism of function of LAE1 in Trichoderma reesei. In Meeting Abstracts (p. 93). http://hdl.handle.net/20.500.12708/47827 ( reposiTUm)

Fekete, E., Kubicek, C. P., De Vries, R., Seiboth, B., Sandor, E., vanKuyk, P., & Karaffa, L. (2012). D-galactose uptake of Aspergillus niger. In Meeting Abstracts (p. 256). http://hdl.handle.net/20.500.12708/47825 ( reposiTUm)

Ivanova, C., Baath, J. A., Seiboth, B., & Kubicek, C. P. (2012). Lactose induces all genes related to plant biomass hydrolysis and corresponding mono- and oligosaccharide transporters in Trichoderma reesei. In Meeting Abstracts (p. 62). http://hdl.handle.net/20.500.12708/47822 ( reposiTUm)

Herold, S., Seiboth, B., & Kubicek, C. P. (2012). Regulation of xylanase expression in the biomass degrading fungus Trichoderma reesei. In Topcial Issues of Rational Use of Natural Resources Vol. II (p. 123). http://hdl.handle.net/20.500.12708/47823 ( reposiTUm)

Lichius, A., Kubicek, C. P., & Seidl-Seiboth, V. (2012). Monitoring nucleo-cytoplasmic shuttling of CRE1 and XYR1 during cellulase induction in Trichoderma reesei. In Abstract Book 2012 (p. 97). http://hdl.handle.net/20.500.12708/47916 ( reposiTUm)

Ghassemi, S., Lichius, A., Kubicek, C. P., & Seidl-Seiboth, V. (2012). Nuclear transport and cellulase production in Trichoderma reesei. In Abstract Book 2012 (p. 100). http://hdl.handle.net/20.500.12708/47918 ( reposiTUm)

Seidl-Seiboth, V., Zach, S., Frischmann, A., Spadiut, O., Dietzsch, C., Herwig, C., & Kubicek, C. P. (2012). Functional analysis and structural features of fungal LysM chitin-binding proteins. In Abstract Book 2012 (p. 91). http://hdl.handle.net/20.500.12708/47920 ( reposiTUm)

Espino Tenorio de Rammer, L., Komon-Zelazowska, M., Ribitsch, D., Greimel, K. J., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2012). The HFB4 family : novel class II hydrophobins of Trichoderma with universal infrageneric distribution and potential for industrial applications. In Meeting Abstracts (p. 254). http://hdl.handle.net/20.500.12708/47860 ( reposiTUm)

Atanasova, L., Le Crom, S., Gruber, S. G., Coulpier, F., Seidl-Seiboth, V., Druzhinina, I., & Kubicek, C. P. (2012). Functional diversity of Trichoderma mycoparasitism. In Meeting Abstracts (p. 129). http://hdl.handle.net/20.500.12708/47858 ( reposiTUm)

Przylucka, A., Espino Tenorio de Rammer, L., Kubicek, C. P., & Druzhinina, I. (2012). A novel group of class II hydrophobins from Trichoderma with biased occurrence. In Meeting Abstracts (p. 254). http://hdl.handle.net/20.500.12708/47859 ( reposiTUm)

Seiboth, B., Ivanova, C., Baath, J. A., & Kubicek, C. P. (2012). Systems analysis of lactose metabolism in Trichoderma reesei identifies a lactose permease that is essential for cellulase induction. In Eurofung Meeting (p. 5). http://hdl.handle.net/20.500.12708/47883 ( reposiTUm)

Seiboth, B., Ivanova, C., Baath, J. A., & Kubicek, C. P. (2012). Systems analysis of lactose metabolism in Trichoderma reesei. In Absztraktfüzet (p. 48). http://hdl.handle.net/20.500.12708/47884 ( reposiTUm)

Karimi Aghcheh, R., Druzhinina, I., Atanasova, L., & Kubicek, C. P. (2012). Conidiation is the major target of LAE1 function in Trichoderma atroviride. In Meeting Abstracts (p. 94). http://hdl.handle.net/20.500.12708/47856 ( reposiTUm)

Seidl-Seiboth, V., & Kubicek, C. P. (2011). New avenues for fungal strain improvement towards enzymatic degradation of cellulosic biomass for biofuel production. In Highlights der Bioenergieforschung, Nationale und Internationale Ergebnisse zu den IEA Schwerpunkten (pp. 141–144). http://hdl.handle.net/20.500.12708/47308 ( reposiTUm)

Gruber, S. G., Kubicek, C. P., & Seidl-Seiboth, V. (2011). The multifunctional roles of chitinases in mycoparasitism and cell wall remodelling in the fungus Trichoderma. In BIOspektrum (p. 136). Spektrum. http://hdl.handle.net/20.500.12708/47541 ( reposiTUm)

Komon-Zelazowska, M., Kopchinskiy, A., Kubicek, C. P., & Druzhinina, I. (2011). Genus-wide screening for class II hydrophobins in Hypocrea/Trichoderma using phylogenetic and metagenomic approaches. In Abstracts (pp. 302–303). http://hdl.handle.net/20.500.12708/47563 ( reposiTUm)

Atanasova, L., Le Crom, S., Gruber, S. G., Coulpier, F., Seidl, V., Druzhinina, I., & Kubicek, C. P. (2011). The transcriptional profile of Trichoderma mycoparasitism. In Conference Series (p. 102). http://hdl.handle.net/20.500.12708/47560 ( reposiTUm)

Marzouk, M. A., Ali, M. . I. A., Yasser, M. M., Mousa, A. S., Kubicek, C. P., & Druzhinina, I. (2011). Molecular ecology of Trichoderma in Nile river basin and surrounding ecosystems in Egypt. In Abstracts (pp. 254–255). http://hdl.handle.net/20.500.12708/47562 ( reposiTUm)

Karimi Aghcheh, R., Bok, J. W., Omann, M., Zeilinger, S., Linke, R., Seiboth, B., Baker, S. E., Keller, N. P., & Kubicek, C. P. (2011). The Trichoderma LaeA orthologue LAE1 identifies new targets of epigenetic regulation in fungi. In Fungal Genetics Report (p. 174). http://hdl.handle.net/20.500.12708/47548 ( reposiTUm)

Herold, S., Kubicek, C. P., & Seiboth, B. (2011). Xylanase induction in Trichoderma reesei by D-xylose. In Eurofung Meeting (p. 15). http://hdl.handle.net/20.500.12708/47546 ( reposiTUm)

Seiboth, B., Karimi Aghcheh, R., Linke, R., Sauer, D. G., Baker, S. E., & Kubicek, C. P. (2011). Epigenetic regulation of cellulase gene expression by Trichoderma reesei. In Abstract Book (p. 58). http://hdl.handle.net/20.500.12708/47545 ( reposiTUm)

Atanasova, L., Friedl, M., Bauer, H., Puxbaum, H., Kubicek, C. P., & Druzhinina, I. (2010). Metagenomic study of air borne diversity of mycoparasitic fungus Trichoderma (anamorph Hypocrea). In Biospektrum (p. 38). http://hdl.handle.net/20.500.12708/47067 ( reposiTUm)

Atanasova, L., Jaklitsch, W. M., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2010). A new cellulase producing species Trichoderma parareesei nom. prov. reveals high antagonistic potential against soil and plant pathogenic fungi. In IOBC/WPRS Working Group (p. 82). http://hdl.handle.net/20.500.12708/47066 ( reposiTUm)

Schuster, A., Tisch, D., Kubicek, C. P., & Schmoll, M. (2010). Targets of the cAMP signaling pathway in Trichoderma reesei (Hypocrea jecorina). In Molecular and Applied Biosciences Austria 2010 (p. 80). http://hdl.handle.net/20.500.12708/47069 ( reposiTUm)

Tisch, D., Kubicek, C. P., & Schmoll, M. (2010). Heterotrimeric G-protein signaling in Trichoderma reesei (Hypocrea jecorina) : The role of phosducins in cellulase regulation. In Molecular and Applied Biosciences Austria 2010 (p. 81). http://hdl.handle.net/20.500.12708/47070 ( reposiTUm)

Schmoll, M., Seibel, C., & Kubicek, C. P. (2010). Sexual development in the biotechnological workhorse Trichoderma reesei : How can we use this new tool to improve biofuel production? In Abstract Book (p. 72). http://hdl.handle.net/20.500.12708/47071 ( reposiTUm)

Schmoll, M., Seibel, C., & Kubicek, C. P. (2010). Applications of sexual development of Trichoderma reesei in research and industry : Perspectives and challenges. In Meeting Abstracts (p. 116). http://hdl.handle.net/20.500.12708/47072 ( reposiTUm)

Gruber, S. G., Vaaje-Kolstad, G., Matarese, F., Kubicek, C. P., & Seidl-Seiboth, V. (2010). Fungal chitinases : regulation of subgroup C-chitinases containing multiple carbohydrate binding domains by internal and external inducers in Trichoderma atroviride. In IMC9 The Biology of Fungi. 9#^{th} International Mycological Congress, Edinburgh, UK, EU. http://hdl.handle.net/20.500.12708/47088 ( reposiTUm)

Seidl, V., Gruber, S. G., Sezerman, O. U., Baker, S. E., & Kubicek, C. P. (2010). Fungal hydrophobins are regulated by differtial splicing. In Molecular and Applied Biosciences Austria 2010 (pp. 44–45). http://hdl.handle.net/20.500.12708/47086 ( reposiTUm)

Gruber, S. G., Vaaje-Kolstad, G., Matarese, F., Lopez-Mondejar, R., Kubicek, C. P., & Seidl-Seiboth, V. (2010). Analysis of subgroup C of fungal chitinases containing chitin-binding and LysM modules in the mycoparasite Trichoderma atroviride. In Molecular and Applied Biosciences Austria 2010 (pp. 83–84). http://hdl.handle.net/20.500.12708/47092 ( reposiTUm)

Gruber, S. G., Vaaje-Kolstad, G., Matarese, F., Lopez-Mondejar, R., Kubicek, C. P., & Seidl-Seiboth, V. (2010). Regulation of fungal chitinases containing LysM motifs and adjacent LysM-proteins in Trichoderma atroviride. In Book of Abstracts (p. 86). http://hdl.handle.net/20.500.12708/47091 ( reposiTUm)

Fekete, E., Karaffa, L., Fekete, E., Seiboth, B., Kubicek, C. P., & Flipphi, M. (2010). Identification of a beta-galactosidase/lactose permease gene couple and the characterisation of lactose transport in Aspergillus nidulans. In IMC9 The Biology of Fungi. 9#^{th} International Mycological Congress, Edinburgh, UK, EU. http://hdl.handle.net/20.500.12708/47045 ( reposiTUm)

Portnoy, T., Margeot, A., Seidl, V., Le Crom, S., Ben Chaabane, F., Seiboth, B., & Kubicek, C. P. (2010). Transcriptional response is a limiting factor in cellulase overproduction by Trichoderma reesei. In Meeting Abstracts (p. 88). http://hdl.handle.net/20.500.12708/47043 ( reposiTUm)

Seidl-Seiboth, V., & Kubicek, C. P. (2010). Fungal hydrophobic proteins : how fungi protect and disguise themselves in their environment and biotechnological applications of these proteins. In ÖGHMP 2010 Abstracts (p. 89). http://hdl.handle.net/20.500.12708/47048 ( reposiTUm)

Seidl-Seiboth, V., Coutinho, P., Henrissat, B., & Kubicek, C. P. (2010). Trichoderma CAZomes : the carbohydrate degradation potential of mycoparasites. In Book of Abstracts (p. 13). http://hdl.handle.net/20.500.12708/47046 ( reposiTUm)

Seidl, V., Seibel, C., Kubicek, C. P., & Schmoll, M. (2010). Sexual development in the industrial workhorse Trichoderma reesei. In Molecular and Applied Biosciences Austria 2010 (pp. 23–24). http://hdl.handle.net/20.500.12708/47047 ( reposiTUm)

Metz, B., Akel, E., Kubicek, C. P., & Seiboth, B. (2010). Arabinan and L-arabinose metabolism in Trichoderma reesei. In Meeting Abstracts (p. 36). http://hdl.handle.net/20.500.12708/47044 ( reposiTUm)

Gal-Hemed, I., Atanasova, L., Komon-Zelazowska, M., Druzhinina, I., Kubicek, C. P., Viterbo, A., & Yarden, O. (2010). Characterization of Trichoderma isolates of marine origin and assessment of their potential as biocontrol agents. In IOBC/WPRS Working Group (p. 76). http://hdl.handle.net/20.500.12708/46953 ( reposiTUm)

Fekete, E., De Vries, R., Seiboth, B., vanKuyk, P., Kubicek, C. P., & Karaffa, L. (2010). The Galactose-negative Phenotype of Aspergillus niger is Restricted to the Inability of the Conidiospores to Germinate on this Sugar. In IMC9 The Biology of Fungi. 9#^{th} International Mycological Congress, Edinburgh, UK, EU. http://hdl.handle.net/20.500.12708/47032 ( reposiTUm)

Seiboth, B., Karimi Aghcheh, R., Linke, R., Sauer, D. G., Baker, S. E., & Kubicek, C. P. (2010). Epigenetic regulation of (hemi)cellulase gene expression in Trichoderma reesei. In Eurofung Meeting (p. 14). http://hdl.handle.net/20.500.12708/46970 ( reposiTUm)

Lopez-Mondejar, R., Catalano, V., Kubicek, C. P., & Seidl, V. (2009). Beta-N-acetylglucosaminidases are essential for growth of filamentous fungi on chitin. In EUCHIS 2009 Conference Book (p. 76). http://hdl.handle.net/20.500.12708/46633 ( reposiTUm)

Zach, S., Kubicek, C. P., & Seidl, V. (2009). Development of a reusable selection marker system for multiple gene knockouts in Trichoderma atroviride. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46634 ( reposiTUm)

Gruber, S. G., Kubicek, C. P., & Seidl, V. (2009). Regulation of fungal chitinases by cell wall fragments and their relevance for biocontrol. In EUCHIS 2009 Conference Book (p. 86). http://hdl.handle.net/20.500.12708/46632 ( reposiTUm)

Schuster, A., Kubicek, C. P., & Schmoll, M. (2009). A cellulase related dehydrogenase of Hypocrea jecorina (Trichoderma reesei) specifically responsive to soluble inducing compounds. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46635 ( reposiTUm)

Mikus, M., Fekete, E., Karaffa, L., van der Werf, M. J., Seiboth, B., & Kubicek, C. P. (2009). Lactose induction of cellulase gene expression in Hypocrea jecorina : a role for galactosyl-transferases? In Acta Microbiologica et Immunologica Hungarica (pp. 205–206). http://hdl.handle.net/20.500.12708/46624 ( reposiTUm)

Metz, B., Akel, E., Kubicek, C. P., & Seiboth, B. (2009). Arabinan and L-arabinose metabolism in Trichoderma reesei (Hypocrea jecorina) : Components, regulation and other surprises. In Acta Microbiologica et Immunologica Hungarica (pp. 203–204). http://hdl.handle.net/20.500.12708/46626 ( reposiTUm)

Seibel, C., Kubicek, C. P., & Schmoll, M. (2009). Significance of the pheromone receptors for sexual development in Hypocrea jecorina (Trichoderma reesei). In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46627 ( reposiTUm)

Schuster, A., Kubicek, C. P., & Schmoll, M. (2009). A cellulase related dehydrogenase of Hypocrea jecorina (Trichoderma reesei) specifically responsive to soluble inducing compounds. In 31#^{st} Symposium on Biotechnology for Fuels and Chemicals (p. 113). http://hdl.handle.net/20.500.12708/46629 ( reposiTUm)

Seidl, V., Seibel, C., Kubicek, C. P., & Schmoll, M. (2009). Sex and the Trichoderma : New perspectives for industrial strain improvement. In Fungal Genetics Reports (p. 221). http://hdl.handle.net/20.500.12708/46631 ( reposiTUm)

Seidl, V., Seibel, C., Kubicek, C. P., & Schmoll, M. (2009). Sex and the Trichoderma : New perspectives for industrial strain improvement. In Fungal Genetics Reports (p. 80). http://hdl.handle.net/20.500.12708/46630 ( reposiTUm)

Tisch, D., Kubicek, C. P., & Schmoll, M. (2009). The class I phosducin like protein PhLP1 and its connection to the light signaling cascade in Hypocrea jecorina. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46628 ( reposiTUm)

Dong, H., Kemptner, J., Marchetti-Deschmann, M., Kubicek, C. P., & Allmaier, G. (2009). Optimization of MALDI TOF MS sample preparation for the differentiation of intact spores from the fungus Fusarium. In 27th Informal Meeting on Mass Spectrometry - Conference Abstract Volume (p. 35). http://hdl.handle.net/20.500.12708/46712 ( reposiTUm)

Marchetti-Deschmann, M., Winkler, W., Kemptner, J., Raptakis, E., Druzhinina, I., Mach, R. L., Kubicek, C. P., & Allmaier, G. (2009). Classification of mycotoxin-producing Fusarium species based on MALDI-TOF MS analyses of their intact spores. In Proceedings of the 57th ASMS conference on mass spectrometry and allied topics (p. 3). http://hdl.handle.net/20.500.12708/46702 ( reposiTUm)

Dong, H., Marchetti-Deschmann, M., Kubicek, C. P., & Allmaier, G. (2009). On-target tryptic digestion of intact Fusarium conidia spores combined with MALDI PSD fragment ion analysis for verification of surface-associated proteins. In K. Vekey & L. Drahos (Eds.), 3rd CEEP Symposium Abstract Volume (p. ThPo33). http://hdl.handle.net/20.500.12708/46700 ( reposiTUm)

Hartl, L., Kubicek, C. P., & Seiboth, B. (2009). Role of hexokinases in carbon catabolite repression and induction in Hypocrea jecorina. In Fungal Genetics Reports (p. 97). http://hdl.handle.net/20.500.12708/46688 ( reposiTUm)

Le Crom, S., Schackwitz, W., Pennacchio, L., Magnuson, J., Culley, D., Collett, J., Martin, J., Druzhinina, I., Mathis, H., Monot, F., Seiboth, B., Cherry, B., Rey, M., Berka, R. M., Kubicek, C. P., Baker, S. E., & Margeot, A. (2009). Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. In Eurofung Meeting (p. 24). http://hdl.handle.net/20.500.12708/46693 ( reposiTUm)

Hirschmann, J., Marchetti, M., Dong, H., Winkler, W., Kubicek, C. P., & Allmaier, G. (2008). Intact spore mass spectrometry for fungus identification by vacuum MALDI time-of-flight mass spectrometry. In XII. Ruzickini dani - Zbornik Radova I Sazetaka (p. 78). http://hdl.handle.net/20.500.12708/46327 ( reposiTUm)

Schuster, A., Tisch, D., Seidl, V., Kubicek, C. P., & Schmoll, M. (2008). The cAMP-protein kinase A pathway is dispensable for cellulase gene expression in Hypocrea jecorina (=Trichoderma reesei). In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 119). http://hdl.handle.net/20.500.12708/47250 ( reposiTUm)

Seibel, C., Kredics, L., Kratzer, C., Antal, Z., Kubicek, C. P., & Schmoll, M. (2008). Pathogenesis related gene expression in the opportunistic fungal pathogen Trichoderma longibrachiatum. In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 129). http://hdl.handle.net/20.500.12708/47249 ( reposiTUm)

Seidl, V., Kubicek, C. P., & Schmoll, M. (2008). Sexual development and morphological consequences of mating partner recognition in Hypocrea jecorina. In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 208). http://hdl.handle.net/20.500.12708/47248 ( reposiTUm)

Schmoll, M., & Kubicek, C. P. (2008). Novel signals and their impact on cellulase gene expression in Hypocrea jecorina (Trichoderma reesei). In Enzymatic fiber modification and hydrolysis (p. 15). http://hdl.handle.net/20.500.12708/47238 ( reposiTUm)

Fekete, E., Karaffa, L., Seiboth, B., Szentirmai, A., & Kubicek, C. P. (2008). Lactose metabolism in Aspergillus nidulans requires a lactose permease and an intracellular beta-galactosidase. In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 167). http://hdl.handle.net/20.500.12708/46692 ( reposiTUm)

Fekete, E., Seiboth, B., Kubicek, C. P., Szentirmai, A., & Karaffa, L. (2008). Lack of aldose 1-epimerase in Hypocrea jecorina is a key to cellulase gene expression on lactose. In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 38). http://hdl.handle.net/20.500.12708/46691 ( reposiTUm)

Tisch, D., Gremel, G., Kubicek, C. P., & Schmoll, M. (2008). ENVOY is a circuit breaker between light response and heterotrimeric G-protein signaling in Hypocrea jecorina (anamorph Trichoderma reesei). In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 149). http://hdl.handle.net/20.500.12708/47251 ( reposiTUm)

Schmoll, M., Gremel, G., Dorrer, M., Do Nascimento Silva, R., & Kubicek, C. P. (2008). Light -dependent cellulase regulation in Hypocrea jecorina (anamorph Trichoderma reesei) and the influence of heterotrimeric G-protein signaling on this process. In 9#^{th} European Conference in Fungal Genetics - Meeting Abstracts (p. 121). http://hdl.handle.net/20.500.12708/47247 ( reposiTUm)

Kredics, L., Hatvani, L., Kocsubè, L., Komon-Zelazowska, M., Manczinger, L., Szekeres, A., Vágvölgyi, C., Kubicek, C. P., & Druzhinina, I. (2007). Cells as Producers of Food and Drinks Green Mold diseases of cultivated Mushrooms: Global Developments and the Situation in Hungary. In Power of microbes in industry and environment (p. 40). http://hdl.handle.net/20.500.12708/45941 ( reposiTUm)

Castellanos-Juarez, F., Sànchez, A., Schmoll, M., Kubicek, C. P., & Herrera-Estrella, A. (2007). Characterization of Light Responses in the Cellolytic Fungus Trichoderma reesei. In Fungal,Genetics (p. 110). http://hdl.handle.net/20.500.12708/45940 ( reposiTUm)

Schuster, A., Kubicek, C. P., Friedl, M., Druzhinina, I., & Schmoll, M. (2007). Novel functions of the light response regulatory protein Envoy in Hypocrea jecorina. In Molecular Biology of Fungi (p. 128). http://hdl.handle.net/20.500.12708/45949 ( reposiTUm)

Seidl, V., Kubicek, C. P., & Read, N. D. (2007). Mycoparasitism and competition for living space by Trichoderma. In Ecology of Fungal Communities (p. 30). http://hdl.handle.net/20.500.12708/45935 ( reposiTUm)

Kubicek, C. P. (2007). Genoomweite Einblicke in die Zellfabrik Asbergilus. In Vom Gen zum Produkt - Integration gen- und verfahrenstechnischer Methoden zur Entwicklung biotechnologischer Prozesse (pp. 53–56). http://hdl.handle.net/20.500.12708/45937 ( reposiTUm)

Seidl, V., Read, N. D., & Kubicek, C. P. (2007). The chinitolytic enzyme machinery of filamentous fungi. In Cell Wall Polysaccarides of fungi and plants (p. 68). http://hdl.handle.net/20.500.12708/45936 ( reposiTUm)

Hatvani, L., Kocsubè, L., Antal, Z., Szekeres, A., Druzhinina, I., Kubicek, C. P., Vágvölgyi, C., & Kredics, L. (2007). Pleurotus green mould disease: A PCR -based test for the rapid detection of the causative agents, Trichoderma pleurotophilum and Trichoderma fulvidum. In Acta Microbiologica et Immunologica Hungarica (pp. 45–46). http://hdl.handle.net/20.500.12708/45938 ( reposiTUm)

Metz, B., Polak, S., Kubicek, C. P., & Seiboth, B. (2007). Functional analysis of the Hypocrea jecorina lxr1 encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism. In Fungal Genetics Newsletter (p. 106). http://hdl.handle.net/20.500.12708/45939 ( reposiTUm)

Kubicek, C. P. (2007). Genomic insights into the cell factory Trichoderma reesei (Hypocre jecorina). In Acta Microbiologica et Immunologica Hungarica (pp. 72–73). http://hdl.handle.net/20.500.12708/45932 ( reposiTUm)

Hirschmann, J., Marchetti, M., Mach, R. L., Belgacem, O., Raptakis, E., Kubicek, C. P., & Allmaier, G. (2007). Comparison of different sample preparation techniques for differentiation of mycotoxin-producing Fusarium species by MALDI-TOF/RTOF mass spectrometry. In Proceedings of the 55th ASMS Conference. 55th Annual Conference of the American Society of Mass Spectrometry, Inndianapolis, USA, Non-EU. http://hdl.handle.net/20.500.12708/45966 ( reposiTUm)

Seidl, V., Kubicek, C. P., & Read, N. D. (2007). Cell biology of the mode of action on Neurospora crassa of an antifungal agent from Hypocrea atroviridis. In Fungal Genetics (p. 49). http://hdl.handle.net/20.500.12708/46022 ( reposiTUm)

Seibel, C., Gremel, G., Kubicek, C. P., & Schmoll, M. (2007). The G-alpha protein GNA1 of Hypocrea jecorina impacts both light response and cellulase gene transcription. In Molecular Biology of Fungi (p. 115). http://hdl.handle.net/20.500.12708/45948 ( reposiTUm)

Tisch, D., Gremel, G., Kubicek, C. P., & Schmoll, M. (2007). ENVOY - a circuit breaker between light response and heterotrimetic G-protein signaling? In Molecular Biology of Fungi (p. 129). http://hdl.handle.net/20.500.12708/45950 ( reposiTUm)

Dorrer, M., Gremel, G., Kubicek, C. P., & Schmoll, M. (2007). Hypocrea jecorina adjusts cellulase levels to sulphur availability in dependence of lighr. In Molecular Biology of Fungi (p. 114). http://hdl.handle.net/20.500.12708/45947 ( reposiTUm)

Schmoll, M., Dorrer, M., & Kubicek, C. P. (2007). MINUTE, the unusual a-type pheromone of Hypocrea jecorina (Trichoderma reesei) mediates light regulation of cellulase gene expression. In Fungal Genetics Newsletter, Volume 54 Supplement (p. 118). http://hdl.handle.net/20.500.12708/45931 ( reposiTUm)

Kredics, L., Antal, Z., Szekeres, A., Hatvani, L., Komon-Zelazowska, M., Manczinger, L., Vágvölgyi, C., Nagy, E., Kubicek, C. P., & Druzhinina, I. (2006). Taxonomical aspects of Trichoderma as an opportunistic human patogen. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45718 ( reposiTUm)

Xie, G., Berka, R. M., Henrissat, B., Saloheimo, M., Magnuson, J., Lopez de Leon, A., Cullen, D., Nelson, B., Arvas, M., Westerholm-Parvinen, A., Merino, S., Baker, S. E., Schmoll, M., & Kubicek, C. P. (2006). Community involved fungal genome annotation at the JGI-LANL. In Book of Abstracts (p. 21). http://hdl.handle.net/20.500.12708/47252 ( reposiTUm)

Martinez, D. A., Berka, R. M., Saloheimo, M., Henrissat, B., Cullen, D., Magnuson, J., Lopez de Leon, A., Arvas, M., Baker, S. E., Harris, P., Larrondo, L. F., Merino, S., Nelson, B., Robbertse, B., Schmoll, M., & Kubicek, C. P. (2006). Sequencing, Annotation and Whole Genome Analysis of the Trichoderma reesei Genome. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/47240 ( reposiTUm)

Scherm, B., Demontis, M. A., Ghignone, S., Schmoll, M., Kubicek, C. P., & Migheli, Q. (2006). A Rapid Subtraction Hybridization approach for identifying and cloning differentially expressed genes during the interaction between Trichoderma harzianum and Rhizoctonia solani. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/47241 ( reposiTUm)

Schmoll, M., Friedl, M., Do Nascimento Silva, R., Dorrer, M., & Kubicek, P. C. (2006). Stages and impact of crosstalk between light response and cellulase signal transduction in Hypocrea jecorina (Trichoderma reesei). In I. Druzhinina, A. Kopchinskiy, & P. C. Kubicek (Eds.), 8th European Conference on Fungal Genetics - Book of Abstracts (p. 138). http://hdl.handle.net/20.500.12708/45448 ( reposiTUm)

Dela Cruz, T. E., Schulz, B., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). DNA sequence analysis and metabolic profiles demonstrate existence of two marine Dendryphiella species that do not belong to the genus Scolecobasidium. In Book of Abstracts (p. 418). http://hdl.handle.net/20.500.12708/45447 ( reposiTUm)

Hartl, L., Seiboth, B., & Kubicek, C. P. (2006). Sequential deletion of the Hypocrea jecorina glucokinase and hexokinase genes. In Book of Abstracts (p. 246). http://hdl.handle.net/20.500.12708/45453 ( reposiTUm)

Kubicek, C. P., & Schmoll, M. (2006). Light- and inducer-dependent modulation of cellulase gene expression by the Ga protein Gna3 of Hypocrea jecorina (Trichoderma reesei). In Book of Abstracts (p. 150). http://hdl.handle.net/20.500.12708/45449 ( reposiTUm)

Schmoll, M., Kredics, L., Kratzer, C., Antal, Z., & Kubicek, C. P. (2006). Gene regulation in the emerging fungal pathogen Trichoderma longibrachiatum during its growth in the presence of bronchial epithelial cells. In Book of Abstracts (p. 394). http://hdl.handle.net/20.500.12708/45456 ( reposiTUm)

Komon-Zelazowska, M., Bisset, J., Zafari, D., Hatvani, L., Woo, S. L., Manczinger, L., Lorito, M., Kredics, L., Kubicek, C. P., & Druzhinina, I. (2006). A recently emerging green mold disease in Eurasian oyster mushroom farms is caused by new species of Trichoderma. In Proc.8#^{th} International Mycological Congress (p. 37). http://hdl.handle.net/20.500.12708/45636 ( reposiTUm)

Kopchinski, A., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). TrichoMASTER: integrated multiloci database for Hypocrea/Trichoderma species identification powered by sequence diagnosis, oligonucleotide barcode and similarity search tools. In Proc.8#^{th} International Mycological Congress (p. 38). http://hdl.handle.net/20.500.12708/45637 ( reposiTUm)

Friedl, M., Schmoll, M., Kubicek, C. P., & Druzhinina, I. (2006). Light stimulation of growth and conidiation in Hypocrea atroviridis is carbon source dependent. In I. Druzhinina, A. Kopchinskiy, & P. C. Kubicek (Eds.), 8th European Conference on Fungal Genetics - Book of Abstracts (p. 167). Manz Crossmedia. http://hdl.handle.net/20.500.12708/45633 ( reposiTUm)

Druzhinina, I., La Fe, K., Komon-Zelazowska, M., Ammirati, J., Kubicek, C. P., & Rogers, J. D. (2006). An unknown species from Hypocreaceae isolated from human lungs. In Proc. of 106#^{th} General Meeting of American Society for Microbiology. 106#^{th} General Meeting of American Society for Microbiology, Orlando, Florida, USA, Non-EU. http://hdl.handle.net/20.500.12708/45635 ( reposiTUm)

Jaklitsch, W. M., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). Hypocrea crystalligena sp. nov. and H. voglmayrii sp. nov. from Europe represent two new clades in Hypocrea/Trichoderma phylogeny. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45639 ( reposiTUm)

Friedl, M., Schmoll, M., Kubicek, C. P., & Druzhinina, I. (2006). Carbon source depending interaction of cAMP signalling pathway and light in Hypocrea atroviridis. In 8th International Mycological Congress: Congress Handbook & Abstracts (p. 124). IMC8 Organising Committee. http://hdl.handle.net/20.500.12708/45638 ( reposiTUm)

Marchetti, M., Seidl, V., Schandl, R., Kubicek, C. P., & Allmaier, G. (2006). EST databases for massspectrometric-basedprotein identification: requirement of PSD and CID (MS/MS)experiments for successful identification of aplant defense elicitor. In Book of Abstracts (p. 288). http://hdl.handle.net/20.500.12708/45647 ( reposiTUm)

Druzhinina, I., La Fe, K., Komon-Zelazowska, M., Rogers, J. D., & Kubicek, C. P. (2006). An unkwown species of Hyporeaceae isolated from lung tissue of a patient with pulmonary fibrosis. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45653 ( reposiTUm)

Balmas, V., Scherm, B., Caria, R., Komon-Zelazowska, M., Druzhinina, I., Kubicek, C. P., & Migheli, Q. (2006). Species Pattern, Genetic Diversity and Biocontrol Potential of Trichoderma in Sardinia. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45629 ( reposiTUm)

Druzhinina, I., Kopchinski, A., Komon-Zelazowska, M., & Kubicek, C. P. (2006). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. In Proceedings of the 8#^{th} International Mycological Congress (p. 150). http://hdl.handle.net/20.500.12708/45623 ( reposiTUm)

Belayneh, T., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2006). Indigenous Hypocrea/Trichoderma species as efficient agents for control of coffee wilt disease in Ethiopia. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45630 ( reposiTUm)

Dela Cruz, T. E., Druzhinina, I., Kubicek, C. P., & Schulz, B. (2006). Metabolic profiles support species concept of two marine Dendryphiella species D. arenaria and D. salina. In Proc. of 8#^{th} International Mycological Congress (p. 343). http://hdl.handle.net/20.500.12708/45631 ( reposiTUm)

Marchetti, M., Schandl, R., Allmaier, G., & Kubicek, C. P. (2006). Epl1 , the major secreted protein of Hypocrea atroviridis on glucose is a member of a strongly conserved protein family comprising plant defense response elicitors. In Stress in Yeasts and Filamentous Fungi (p. 79). http://hdl.handle.net/20.500.12708/45619 ( reposiTUm)

Gamauf, C., Pail, M., Hartl, L., Kubicek, C. P., & Seiboth, B. (2006). The metabolic role of Hypocrea jecorina D-xylose reductase and its influence on cellulase gene induction on lactose. In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/45610 ( reposiTUm)

Gamauf, C., Pail, M., Hartl, L., Kubicek, C. P., & Seiboth, B. (2006). The D-xylose reductase of Hypocrea jecorina is a general aldose reductase involved in cellulase induction on lactose. In Book of Abstracts (p. 240). http://hdl.handle.net/20.500.12708/45452 ( reposiTUm)

Seiboth, B., Hartl, L., Gamauf, C., Metz, B., & Kubicek, C. P. (2006). Metabolic engineering of utilization of lactose, a renewable carbon source for cell factory Hypocrea jecorina (Trichoderma reesei). In Industrielle Biotechnologie - Eine Chance für Österreich? (pp. 27–28). http://hdl.handle.net/20.500.12708/45609 ( reposiTUm)

Vàczy, K. Z., Druzhinina, I., Kubicek, C. P., Karaffa, L., Gàl, L., Kövics, G. J., & Sandor, E. (2006). Analysis of Botrytis cinera populations in the Eger and Tokaj wine regions - a multiloci approach. In Book of Abstracts (p. 413). http://hdl.handle.net/20.500.12708/45457 ( reposiTUm)

Schmoll, M., Dorrer, M., & Kubicek, C. P. (2006). Limpet, a light-responsive WD-repeat/F-box protein involved in cellulose signalling and sulphur metabolite repression in Hypocrea jecorina (Trichoderma reesei). In Book of Abstracts. 9#^{th} International Workshop on Trichoderma and Gliocladium, Wien, Austria. http://hdl.handle.net/20.500.12708/47239 ( reposiTUm)

Seidl, V., Huemer, B., Seiboth, B., Druzhinina, I., & Kubicek, C. P. (2005). Characterization of the chitinolytic system ot Trichoderma: development of a novel screening method to monitor gene expression on multiple carbon sources. In Fungal Genetics Asilomar 2005 (p. 106). http://hdl.handle.net/20.500.12708/45128 ( reposiTUm)

Dela Cruz, T. E., Schulz, B., Kubicek, C. P., & Druzhinina, I. (2005). Metabolic and genetic diversity of marine Dendryphiella species from different geographical locations. In Exploitation of Fungi (p. 50). http://hdl.handle.net/20.500.12708/45340 ( reposiTUm)

Do Nascimento Silva, R., Kubicek, C. P., & Schmoll, M. (2005). The Hypocrea jecorina (Trichoderma reesei) Gα protein Tga3is involved in cellulase (cbh1 and cbh2) gene expression ina light-dependent manner. In Life Siences (p. 32). http://hdl.handle.net/20.500.12708/45328 ( reposiTUm)

Kubicek, C. P. (2005). Trichoderma: A Versatile Industrial Fungus Goes Genomic. In Acta Microbiologica et Immunologica (p. 86). http://hdl.handle.net/20.500.12708/45334 ( reposiTUm)

Seiboth, B., Hartl, B., Gamauf, C., Polak, S., & Kubicek, C. P. (2005). Regulation of Cellulases Expression During Growth on Lactose in Hypocrea Jecorina. In Acta Microbiologica et Immunologica (pp. 140–141). http://hdl.handle.net/20.500.12708/45338 ( reposiTUm)

Sandor, E., Vàczy, K. Z., Druzhinina, I., Kubicek, C. P., & Karaffa, L. (2005). Genetic Characterization of Grape-Infecting, Botrytis Cinerea Populations from the Eger Wine Region, Hungary. In Acta Microbiologica et Immunologica (p. 135). http://hdl.handle.net/20.500.12708/45336 ( reposiTUm)

Schmoll, M., Dorrer, M., & Kubicek, C. P. (2005). Minute, a novel and unique protein of Hypocrea jecorina (Trichoderma reesei) modulates light regulation of cellulase gene expression. In Molecular Biology of Fungi (p. 55). http://hdl.handle.net/20.500.12708/45327 ( reposiTUm)

Schmoll, M., Dorrer, M., & Kubicek, C. P. (2005). Climbing up the cellulase signalling cascade of Hypocrea jecorina (Trichoderma reesei) : Minute,a novel protein interacting with the light-modulator Envoy influences cellulase gene expression. In Eurofung - The Genomic Era (p. 14). http://hdl.handle.net/20.500.12708/46852 ( reposiTUm)

Schmoll, M., Zeilinger, S., Mach, R. L., & Kubicek, C. P. (2002). A Rapid Subtraction Hybridization protocol (RaSH) for identification of genes whose expression is impaired in the cellulase negative mutant strain Hypocrea jecorina QM9978. In Joint Annual Meeting of the ÖGBM,ÖGGGT,ÖGBT,ANGT (p. 65). http://hdl.handle.net/20.500.12708/47253 ( reposiTUm)

Schmoll, M., Zeilinger, S., Mach, R. L., & Kubicek, C. P. (2002). A rapid substraction hybridization protocol (RaSH) for identification of genes whose expression is impaired in the cellulase-neagative mutant strain Hypocrea jecorina QM 9978. In Proceedings of the 6#^{th} European Conference on fungal genetics (p. 214). http://hdl.handle.net/20.500.12708/45072 ( reposiTUm)

Karaffa, L., Fekete, E., Sandor, E., Sepsi, A., Seiboth, B., Szentirmai, A., & Kubicek, C. P. (2002). Carbon Catabolite Repression in the Regulation of bβ-Galactosidase Activity in Aspergillus Nidulans. In Acta Microbiologica et Immunologica (pp. 261–265). http://hdl.handle.net/20.500.12708/45339 ( reposiTUm)

Cai, F., Kubicek, C. P., & Druzhinina, I. S. (2021). Genetic Transformation of Trichoderma spp. In Biofuels and Biodiesel (pp. 171–185). Springer Nature Switzerland AG 2021. https://doi.org/10.1007/978-1-0716-1323-8_12 ( reposiTUm)

Karaffa, L., & Kubicek, C. P. (2021). Production of Organic Acids by Fungi. In O. Zaragoza & A. Casadevall (Eds.), Encyclopedia of Mycology (pp. 406–419). Elsevier Inc. http://hdl.handle.net/20.500.12708/30572 ( reposiTUm)

Druzhinina, I., & Kubicek, P. C. (2016). Volume Preface. In I. Druzhinina & C. P. Kubicek (Eds.), Environmental and Microbial Relationships (pp. 11–13). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-29532-9 ( reposiTUm)

Chenthamara Kariyankode, K., & Druzhinina, I. (2016). Ecological Genomics of Mycotrophic Fungi. In I. Druzhinina & C. P. Kubicek (Eds.), Environmental and Microbial Relationships (pp. 215–246). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-29532-9_12 ( reposiTUm)

Druzhinina, I. S., & Kubicek, C. P. (2016). Familiar Stranger: Ecological Genomics of the Model Saprotroph and Industrial Enzyme Producer Trichoderma reesei Breaks the Stereotypes. In sima Sariaslani & G. M. Gadd (Eds.), Advances in Applied Microbiology. Volume 95 (Vol. 95, pp. 69–147). Elsevier Inc. https://doi.org/10.1016/bs.aambs.2016.02.001 ( reposiTUm)

Ramoni, J., & Seiboth, B. (2016). 6 Degradation of Plant Cell Wall Polymers by Fungi. In I. Druzhinina & P. C. Kubicek (Eds.), Environmental and Microbial Relationships (Vol. 4, pp. 127–148). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-29532-9_6 ( reposiTUm)

Kubicek, C. P., & Druzhinina, I. (2015). Trichoderma Mycoses and Mycotoxins. In R. R. M. Paterson & N. Lima (Eds.), Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi (pp. 521–538). CRC Press. http://hdl.handle.net/20.500.12708/28714 ( reposiTUm)

Seiboth, B. (2014). Foreword. In V. K. Gupta, M. G. Tuohy, C. P. Kubicek, J. Saddler, & F. Xu (Eds.), Bioenergy Research: Advances and Applications (p. xi). Elsevier B.V. http://hdl.handle.net/20.500.12708/28238 ( reposiTUm)

Kubicek, C. P. (2014). Foreword. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (p. xiii). Elsevier B.V. http://hdl.handle.net/20.500.12708/28297 ( reposiTUm)

Schmoll, M., Seiboth, B., Druzhinina, I., & Kubicek, C. P. (2014). Genomics Analysis of Biocontrol Species and Iudustrial Enzyme Producers from the Genus Trichoderma. In Fungal Genomics, The Mycota, Vol. XIII (pp. 233–264). Springer-Verlag. http://hdl.handle.net/20.500.12708/28284 ( reposiTUm)

Druzhinina, I., & Kubicek, C. P. (2013). Ecological Genomics of Trichoderma. In The Ecological Genomics of Fungi (pp. 89–116). Wiley - Blackwell. http://hdl.handle.net/20.500.12708/28181 ( reposiTUm)

Seiboth, B., Herold, S., & Kubicek, C. P. (2012). Metabolic Engineering of Inducer Formation for Cellulase and Hemicellulase Gene Expression in Trichoderma reesei. In X. Wang, J. Chen, & P. J. Quinn (Eds.), Subcellular Biochemistry (pp. 367–390). Springer. https://doi.org/10.1007/978-94-007-5055-5_18 ( reposiTUm)

Kubicek, C. P., Seidl, V., & Seiboth, B. (2010). Plant Cell Wall and Chitin Degradation. In Cellular and Molecular Biology of Filamentous Fungi (pp. 396–413). ASM Press. http://hdl.handle.net/20.500.12708/27036 ( reposiTUm)

Druzhinina, I., & Kubicek, C. P. (Eds.). (2016). Environmental and Microbial Relationships IV. Springer International Publishing. http://hdl.handle.net/20.500.12708/24159 ( reposiTUm)

Gupta, V. K., Tuohy, M. G., Kubicek, C. P., Saddler, J., & Xu, F. (2014). Bioenergy Research: Advances and Applications. Elsevier B.V. http://hdl.handle.net/20.500.12708/23940 ( reposiTUm)

Kubicek, C. P. (2013). Fungi and Lignocellulosic Biomass. Wiley - Blackwell. http://hdl.handle.net/20.500.12708/23610 ( reposiTUm)

Kubicek, C. P., & Druzhinina, I. (Eds.). (2007). The Mycota Vol.4 : Environmental and Microbial Relationships. Springer-Verlag. http://hdl.handle.net/20.500.12708/22267 ( reposiTUm)

Druzhinina, I., Kopchinskiy, A., & Kubicek, C. P. (Eds.). (2006). 8th European Conference on Fungal Genetics - Book of Abstracts. Manz Crossmedia. http://hdl.handle.net/20.500.12708/23283 ( reposiTUm)

Wanka, F., Bischof, R., Beinhauer, A., Metz, B., Koger, C., Steiger, M., Gamauf, C., Schirrmacher, G., Kubicek, C. P., & Seiboth, B. (2018). Fine-tuning gene expression: pantothenic acid inducible promoters in Trichoderma reesei. In http://www.ecfg14.org/scientific-program/ (p. 308). http://hdl.handle.net/20.500.12708/50142 ( reposiTUm)

Bischof, R., Seiboth, B., Horejs, J., & Kubicek, C. P. (2016). L-Methionine responsive dioxygenase genes provide promoters for conditional gene expression in Trichoderma reesei. 17#^{th} European Congress on Biotechnology, Krakau, Poland. http://hdl.handle.net/20.500.12708/99999 ( reposiTUm)

Przylucka, A., Ribitsch, D., Herrero-Acero, E., Gübitz, G., Kubicek, C. P., & Druzhinina, I. (2014). Hydrophobins class I versus class II: Trichoderma virens HFB9a and HFB9b (class I) are more effective as enhancing agents in enzymatic PET hydrolysis and surface modulators compared to HFB4 and HFB7 (class II). ECB 16 - 16th European Congress on Biotechnology, Edinburgh, United Kingdom of Great Britain and Northern Ireland (the). http://hdl.handle.net/20.500.12708/99537 ( reposiTUm)

Karaffa, L., Fekete, E., Novak, L., Punt, P. J., Seiboth, B., & Kubicek, C. P. (2013). Mechanisms of the induction of cellulase genes in Trichoderma reesei grown on lactose: A Metabolomics Approach. 4#^{th} Central European Forum for Microbiology, Keszthely, Ungarn, EU. http://hdl.handle.net/20.500.12708/99119 ( reposiTUm)

Lichius, A., Seidl-Seiboth, V., Seiboth, B., & Kubicek, C. P. (2013). Nucleo-cytoplasmic shuttling dynamics of the transcriptional regulators XYR1 and CRE1 under conditions of cellulase and xylanase gene expression in Trichoderma reesei. 4#^{th} Central European Forum for Microbiology, Keszthely, Ungarn, EU. http://hdl.handle.net/20.500.12708/99121 ( reposiTUm)

Kubicek, C. P. (2012). Trichoderma systems biology : how does it compare to Aspergillus. ECFG 11 - 11#^{th} European Conference on Fungal Genetics, Marburg, Deutschland, EU. http://hdl.handle.net/20.500.12708/98842 ( reposiTUm)

Kubicek, C. P. (2012). Systems analysis of cellulase expression in Trichoderma reesei. Biophysikalisch- Chemisches Kolloquium, Wien, (Inst. für Biophysikalische Chemie, Universität Wien), Austria. http://hdl.handle.net/20.500.12708/98841 ( reposiTUm)

Kubicek, C. P. (2012). Targeting Enzymes to Polymers. Progress in Strategic Project 2.3 (II). ACIB Strategic Board Meeting (II), Wien, Austria. http://hdl.handle.net/20.500.12708/98844 ( reposiTUm)

Kubicek, C. P. (2012). Targeting Enzymes to Polymers. Progress in Strategic Project 2.3 (I). ACIB Strategic Board Meeting (I), Wien, Austria. http://hdl.handle.net/20.500.12708/98843 ( reposiTUm)

Komon-Zelazowska, M., Kopchinskiy, A., Kubicek, C. P., & Druzhinina, I. (2011). Genus-wide screening for class II hydrophobins in Hypocrea/Trichoderma using phylogenetic and metagenomic approaches. Alpbacher Universitätenforum, Alpbach, Austria. http://hdl.handle.net/20.500.12708/98613 ( reposiTUm)

Fekete, E., Karaffa, L., Fekete, E., Szentirmai, A., Seiboth, B., Kubicek, C. P., & Flipphi, M. (2011). Identification of a Beta-galactosidase/lactose permease gene couple and the characterisaton of lactose transport in Aspergillus nidulans. 16#^{th} International Congress of the Hungarian Society for Microbiology, Budapest, Ungarn, EU. http://hdl.handle.net/20.500.12708/99129 ( reposiTUm)

Tjandrawati Nugroho, T., Komon-Zelazowska, M., Atanasova, L., Kubicek, C. P., & Druzhinina, I. (2010). Strategy for the correct identification of Indonesian biocontrol fungi using molecular methods. The Gruber-Soedigo Lecture 2010, University of Groningen, Niederlande, EU. http://hdl.handle.net/20.500.12708/98455 ( reposiTUm)

Tisch, D., Gremel, G., Kubicek, C. P., & Schmoll, M. (2009). Regulatory Interactions among G-alpha subunits and their connection to the light response pathway. Mechanisms of Cell Signalling, Oxford, UK, EU. http://hdl.handle.net/20.500.12708/98116 ( reposiTUm)

Hirschmann, J., Marchetti-Deschmann, M., Dong, H., Winkler, W., Pittenauer, E., Kubicek, C. P., & Allmaier, G. (2008). Intact spore mass spectrometry (ISMS) for Fusarium identification and lipid characterization by vacuum MALDI mass spectrometry. Faculty of Food Sciences seminar, J.J. Strossmayer University, Osijek, Croatia, Non-EU. http://hdl.handle.net/20.500.12708/97915 ( reposiTUm)

Hirschmann, J., Marchetti, M., Mach, R. L., Kubicek, C. P., & Allmaier, G. (2008). Intact spore mass spectrometry (ISMS) - vacuum MALDI TOF mass spectrometry of spores of the fungi Fusarium. MassSpec-Forum Vienna 2008, Wien, Austria. http://hdl.handle.net/20.500.12708/97922 ( reposiTUm)

Kubicek, C. P. (2007). Trichoderma - a versatile organism for biotechnology. Seminar des Instituts für Umwelttechnologie, Graz, Austria. http://hdl.handle.net/20.500.12708/97612 ( reposiTUm)

Kubicek, C. P. (2007). Roger D. Kornberg und die RNA polymerase II Eukaryonten - der Chemie Nobelpreis 2006. Vortrag im Rahmen der Österreichischen Physikalischen Gesellschaft, (*), Austria. http://hdl.handle.net/20.500.12708/97613 ( reposiTUm)

Komon-Zelazowska, M., Mpika, J., Kubicek, C. P., & Druzhinina, I. (2007). Icommensurably low diversity of Hypocrea/Trichoderma in the rhizosphere of Theobroma cacao L. infected by black pod in Ivory Coast cacao plantation s. Biological Control Symposium, Graz, Austria. http://hdl.handle.net/20.500.12708/97614 ( reposiTUm)

Belayneh, T., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2007). Ethiopia as a hot spot for diversity of indigenous Hypocrea/Trichoderma species: screening for efficient agents to control coffee wilt disease. Biological Control Symposium, Graz, Austria. http://hdl.handle.net/20.500.12708/97615 ( reposiTUm)

Druzhinina, I., Kopchinski, A., Komon-Zelazowska, M., & Kubicek, C. P. (2005). An oligonucleotide barcode for species identification in Trichoderma and Hypocrea. MBE 05, Auckland, New Zealand, Non-EU. http://hdl.handle.net/20.500.12708/96974 ( reposiTUm)

Kopchinski, A., Komon-Zelazowska, M., Kubicek, C. P., & Druzhinina, I. (2005). TrichoBLAST: a multiloci database of phylogenetic markers for Trichoderma and Hypocrea powerd by sequence diagnosis and similarity search tool. MBE 05, Auckland, New Zealand, Non-EU. http://hdl.handle.net/20.500.12708/96975 ( reposiTUm)

Messner, K., Srebotnik, E., Kubicek, C. P., Adamitsch, B., Friedl, A., & Gapes, J. R. (2004). Bioethanol Research at TU-Wien. IEA Conference, Kyoto, Japan, Austria. http://hdl.handle.net/20.500.12708/96777 ( reposiTUm)

Komon-Zelazowska, M., Poputnikova, T., Terekhova, V., Kubicek, C. P., & Druzhinina, I. (2004). Trichoderma biodiversity in virgin spruce south taiga ecosystems. Int. Symposium from Ecosystem Functioning to Biotechnology Application, Vienna , Austria, Austria. http://hdl.handle.net/20.500.12708/96642 ( reposiTUm)

Schmoll, M., Seiboth, B., Druzhinina, I., Pail, M., Seidl, V., Hartl, L., Gamauf, C., Komon-Zelazowska, M., Dorrer, M., Huemer, B., & Kubicek, C. P. (2004). Microbial enzymes for industrial application of renewable raw materials: molecular basis for strain improvement in Trichoderma . 1.Minisysmposium für Nachwachsende Rohstoffe und Erneuerbare Energien, Wien, Austria. http://hdl.handle.net/20.500.12708/96480 ( reposiTUm)

Seiboth, B., Adamitsch, B., Cziferszky, A., Pail, M., & Kubicek, C. P. (2002). Consequences of the genetic engineering of the Leloir pathway on lactose metabolism in Trichoderma reesei. Eurofung 4th Meeting, Pisa, Italy, Austria. http://hdl.handle.net/20.500.12708/95938 ( reposiTUm)

Seiboth, B., Karaffa, L., Pail, M., Hartl, L., & Kubicek, C. P. (2002). Lactose metabolism in Trichoderma reesei: cellulase induction requires the gal1 gene product and galactose acts as an inducer under carbon catabolite derepressed conditions. Eurofung 4th Meeting, Pisa, Italy, Austria. http://hdl.handle.net/20.500.12708/95937 ( reposiTUm)

Pail, M., Hartl, L., Seiboth, B., & Kubicek, C. P. (2002). Characterization of the Hypocrea jecorina xylitol dehydrogenase. Joint Annual Meeting of the ÖGBM, ÖGGGT, ÖGBT, ANGT, Salzburg, Austria. http://hdl.handle.net/20.500.12708/95936 ( reposiTUm)

Zeilinger, S., Schmoll, M., Pail, M., Mach, R. L., & Kubicek, C. P. (2002). C.P. Involvement of chromatin rearrangements in the regulation of Hypocrea jecorina (Trichoderma reesei) cellulase promoter cbh2. Joint Trichoderma - Gliogladium and Tricell Meeting, Cancun, Mexico, Austria. http://hdl.handle.net/20.500.12708/95950 ( reposiTUm)

Zeilinger, S., Schmoll, M., Pail, M., Mach, R. L., & Kubicek, C. P. (2002). Nucleosome transactions on the Hypocrea jecorina ebh2 promoter reveal a novel role for the carbon catabolite repressor protein Cre1 in chromatin rearrangement. 6#^{th} European Conference on Fungal Genetics, Pisa, Italy, Austria. http://hdl.handle.net/20.500.12708/98161 ( reposiTUm)

Mach, R. L., Kullnig, C., Farnleitner, A. H., Reischer, G., Adler, A., & Kubicek, C. P. (2001). Detection of different Fusarium spp. Of the section Discolor and Sporotrichiella using DGGE (Denaturating Gradient Gele Electrophoresis ) and ARMS PCR (Amplification Refractory Mutation System) . ALVA- meeting 2001, Wolfpassing ,Austria, Austria. http://hdl.handle.net/20.500.12708/96298 ( reposiTUm)

Mach, R. L., Kullnig, C., Farnleitner, A. H., Reischer, G., Adler, A., & Kubicek, C. P. (2001). Molecular dedection of the F.langsethae ,F. poae ,and F. sporotrichioides complex . COST 835, Athen ,Greece, Austria. http://hdl.handle.net/20.500.12708/96299 ( reposiTUm)

Mach, R. L., Gherbawy, Y., Adler, A., Kullnig, C., Prillinger, H.-J., & Kubicek, C. P. (2001). Systematics of the Gibberella fujikuroi Species  complex Isolated from Austrian Maize . Mold Meeting, Gars am Kamp, Austria. http://hdl.handle.net/20.500.12708/96300 ( reposiTUm)

Wacenovsky, C., Rauscher, R., Kubicek, C. P., & Mach, R. L. (2000). Hypocrea jecorina (Trichoderma reesei) xyn1 expression is regulated by a concerted action of three different DNA binding proteins . 5#^{th} European Conference on fungal genetics, Arcachon ,France, Austria. http://hdl.handle.net/20.500.12708/96297 ( reposiTUm)

Mach, R. L., Kullnig, C., & Kubicek, C. P. (1999). Identification of Austrian Fusarium spp.by molecular biological methods . ALVA-meeting 1999, Linz , Austria, Austria. http://hdl.handle.net/20.500.12708/96296 ( reposiTUm)

Mach, R. L., Payer, K., Zeilinger, S., Galhaup, C., Jaksits, S., Lorito, M., & Kubicek, C. P. (1998). Trichoderma harzianum chitinases and their function in the regulation of biocontrol . 1.Symposium on Phytopathologie in Horticulture, Vienna ,Austria, Austria. http://hdl.handle.net/20.500.12708/96294 ( reposiTUm)

Mach, R. L., Peterbauer, C., Payer, K., Jaksits, S., Woo, S. L., Lorito, M., & Kubicek, C. P. (1998). Analysis of regulation of the nag1 (N-Acetyl-ß-D-glucosaminidase) and of ech42 (endochitinase) gene expression in the mycoparasite Trichoderma harzianum . COST 835, Athen ,Greece, Austria. http://hdl.handle.net/20.500.12708/96293 ( reposiTUm)

Mach, R. L., Zeilinger, S., Galhaup, C., Payer, K., Fekete, E., Lorito, M., Woo, S. L., & Kubicek, C. P. (1998). The filamentous fungus Trichoderma harzianum is a  potent mycoparasite . COST 835, Athen ,Greece, Austria. http://hdl.handle.net/20.500.12708/96292 ( reposiTUm)

Mach, R. L., Strauss, J., & Kubicek, C. P. (1998). DNA binding ability of Cre1 of Trichoderma reesei is regulated by phosphorylation/dephosphorylation . 4#^{th} European Conference on Fungal Genetics, Leon , Spain, Austria. http://hdl.handle.net/20.500.12708/96291 ( reposiTUm)

Mach, R. L., Strauss, J., & Kubicek, C. P. (1997). Phosphorylation/dephosphorylation regulates binding of the carbon catabolite repressor  Cre1 of Trichoderma reesei to its corresponding consensus sequence. VAAM-Conference, Molecular Biology of Fungi, Landshut , Germany, Austria. http://hdl.handle.net/20.500.12708/96290 ( reposiTUm)

Mach, R. L., Strauss, J., Zeilinger, S., & Kubicek, C. P. (1996). Carbon catabolite repression of xylanase gene expression in Trichoderma reesei interferes with xy1 and xy2 transcription in different ways . 8#^{th} International congress of Mycology Division, Jerusalem , Israel, Austria. http://hdl.handle.net/20.500.12708/96289 ( reposiTUm)

Mach, R. L., Seiboth, B., Rauscher, R., Stangl, H., Gruber, H., & Kubicek, C. P. (1996). A CCAAT-box mediates sophorose-induction of cbh2 (cellobiohydrolase II-encoding ) gene expression in the filamentuos fungus Trichoderma reesei . 3#^{rd} European Conference on Fungal Genetics, Münster ,Germany, Austria. http://hdl.handle.net/20.500.12708/96288 ( reposiTUm)

Mach, R. L., Strauss, J., Schindler, M., Zeilinger, S., Adler, A., & Kubicek, C. P. (1995). Glucose repression of xylanase formation by Trichoderma reesei regulates xyn1 but not xyn2 gene expression and is mediated by the Cre1 gene product . EMBO Workshop on the molecular biology of filamentous fungi , genome structure ,maintendance and expression, Ambelside ,UK, Austria. http://hdl.handle.net/20.500.12708/96286 ( reposiTUm)

Streichsbier, F., Toth, J., & Kubicek, C. P. (1985). Utilization of chitin as a sole source of carbon and nitrogen by Chromobacterium violaceum : parameters influencing growth and enzyme formation and location. 3rd. Int. Symp. on chitin-chitosan, Senegallia, Italy, Austria. http://hdl.handle.net/20.500.12708/96324 ( reposiTUm)

Kubicek, C. P. (2012). 4.Projektbericht AB-Enzymes. http://hdl.handle.net/20.500.12708/37379 ( reposiTUm)

Kubicek, C. P. (2012). 4.Projektbericht Biomethods. http://hdl.handle.net/20.500.12708/37391 ( reposiTUm)

Kubicek, C. P. (2012). 5. Projektbericht Biomethods. http://hdl.handle.net/20.500.12708/37435 ( reposiTUm)

Kubicek, C. P. (2012). 2. Projektbericht AB-Enzymes. http://hdl.handle.net/20.500.12708/37467 ( reposiTUm)

Kubicek, C. P. (2012). 3.Projektbericht AB-Enzymes. http://hdl.handle.net/20.500.12708/37493 ( reposiTUm)

Kubicek, C. P. (2012). Endbericht Projekt Biomethods. http://hdl.handle.net/20.500.12708/37495 ( reposiTUm)

Kubicek, C. P. (2012). 6. Projektbericht Biomethods. http://hdl.handle.net/20.500.12708/37494 ( reposiTUm)

Linke, R., Kubicek, C. P., & Seiboth, B. (2012). 3.6.2. Project Report, 3rd interim report 2012. http://hdl.handle.net/20.500.12708/37526 ( reposiTUm)

Linke, R., Kubicek, C. P., & Seiboth, B. (2012). 3.6.2. Project Report, 2nd interim report 2012. http://hdl.handle.net/20.500.12708/37525 ( reposiTUm)

Bischof, R., Kubicek, C. P., & Seiboth, B. (2012). New technologies for strain engineering in Trichoderma reesei (1st interim report 2012). http://hdl.handle.net/20.500.12708/37528 ( reposiTUm)

Linke, R., Kubicek, C. P., & Seiboth, B. (2012). 3.6.2. Project Report, 4th interim report 2012. http://hdl.handle.net/20.500.12708/37527 ( reposiTUm)

Linke, R., Kubicek, C. P., & Seiboth, B. (2012). 3.6.2. Project Report, 1st interim report 2012. http://hdl.handle.net/20.500.12708/37524 ( reposiTUm)

Bischof, R., Kubicek, C. P., & Seiboth, B. (2012). New technologies for strain engineering in Trichoderma reesei (2nd interim report 2012). http://hdl.handle.net/20.500.12708/37529 ( reposiTUm)

Bischof, R., Kubicek, C. P., & Seiboth, B. (2012). New technologies for strain engineering in Trichoderma reesei (3rd interim report 2012). http://hdl.handle.net/20.500.12708/37530 ( reposiTUm)

Bischof, R., Kubicek, C. P., & Seiboth, B. (2012). New technologies for strain engineering in Trichoderma reesei (th interim report 2012). http://hdl.handle.net/20.500.12708/37531 ( reposiTUm)

Seiboth, B., Linke, R., & Kubicek, C. P. (2011). 3.6.1. Project Report, 3rd interim report. http://hdl.handle.net/20.500.12708/37189 ( reposiTUm)

Seiboth, B., Metz, B., & Kubicek, C. P. (2011). New technologies for strain engineering in Trichoderma reesei (2nd interim report). http://hdl.handle.net/20.500.12708/37192 ( reposiTUm)

Seiboth, B., Metz, B., & Kubicek, C. P. (2011). New technologies for strain engineering in Trichoderma reesei (1st interim report). http://hdl.handle.net/20.500.12708/37191 ( reposiTUm)

Seiboth, B., Linke, R., & Kubicek, C. P. (2011). 3.6.1. Project Report, 2nd interim report. http://hdl.handle.net/20.500.12708/37188 ( reposiTUm)

Seiboth, B., Linke, R., & Kubicek, C. P. (2011). 3.6.1. Project Report, 4th interim report. http://hdl.handle.net/20.500.12708/37190 ( reposiTUm)

Seiboth, B., Metz, B., Bischof, R., & Kubicek, C. P. (2011). New technologies for strain engineering in Trichoderma reesei (3rd interim report). http://hdl.handle.net/20.500.12708/37193 ( reposiTUm)

Seiboth, B., Bischof, R., & Kubicek, C. P. (2011). New technologies for strain engineering in Trichoderma reesei (4th interim report). http://hdl.handle.net/20.500.12708/37194 ( reposiTUm)

Seiboth, B., Linke, R., & Kubicek, C. P. (2011). 3.6.1. Project Report, 1st interim report. http://hdl.handle.net/20.500.12708/37187 ( reposiTUm)

Druzhinina, I., & Kubicek, C. P. (2010). Large scale screening for new Hypocrea/Trichoderma isolates active in biological control of pests. http://hdl.handle.net/20.500.12708/36769 ( reposiTUm)

Kubicek, C. P., Ivanova, C., & Seiboth, B. (2010). Trichoderma technology development DTT : 2nd interim report. http://hdl.handle.net/20.500.12708/36771 ( reposiTUm)

Kubicek, C. P., Ivanova, C., & Seiboth, B. (2010). Trichoderma technology development DTT : 3rd interim report. http://hdl.handle.net/20.500.12708/36773 ( reposiTUm)

Kubicek, C. P., Allmaier, G., Mach, R. L., & Druzhinina, I. (2009). Multidisziplinäre Detektion und Beurteilung einheimischer Fusarien (Endbericht). http://hdl.handle.net/20.500.12708/35745 ( reposiTUm)

Kubicek, C. P., Seiboth, B., & Linke, R. (2009). Increase of cellulase production in Trichoderma reesei by integrated molecular and classical strain improvement (Endbericht). http://hdl.handle.net/20.500.12708/35747 ( reposiTUm)

Kubicek, C. P., & Druzhinina, I. (2009). Biosprit aus Algen (Endbericht). http://hdl.handle.net/20.500.12708/35746 ( reposiTUm)

Kubicek, C. P., & Druzhinina, I. (2009). Large scale screening for new Hypocrea / Trichoderma isolates active in biological control of pests (1.Zwischenbericht). http://hdl.handle.net/20.500.12708/35748 ( reposiTUm)

Kubicek, C. P., & Seiboth, B. (2009). New technologies for Trichoderma strain improvement (1.Zwischenbericht). http://hdl.handle.net/20.500.12708/35749 ( reposiTUm)

Seiboth, B., & Kubicek, C. P. (2007). 3rd Interim Report on New Genes Protein of Trichoderma GEPROMA 2. http://hdl.handle.net/20.500.12708/32688 ( reposiTUm)

Seiboth, B., & Kubicek, C. P. (2007). 2nd interim report on New Genes and Proteins of Trichoderma GEPROMA 2. http://hdl.handle.net/20.500.12708/32687 ( reposiTUm)

Kubicek, C. P., & Druzhinina, I. (2007). Population genetics and phylogeny of Trichoderma. http://hdl.handle.net/20.500.12708/32685 ( reposiTUm)

Kubicek, C. P., & Seiboth, B. (2007). Regulation of lactose induction of cellulase formation in Trichoderma reesei, Final report. http://hdl.handle.net/20.500.12708/32686 ( reposiTUm)

Komon-Zelazowska, M., & Kubicek, C. P. (2007). Further molecular analysis of a potential industrial strain of Trichoderma (GEPROMA 3), Final Project Report. http://hdl.handle.net/20.500.12708/32690 ( reposiTUm)

Schmoll, M., & Kubicek, C. P. (2007). Expression of performance proteins in Trichoderma reesei. http://hdl.handle.net/20.500.12708/32684 ( reposiTUm)

Mach, R. L., Reischer, G., Kubicek, C. P., & Druzhinina, I. (2004). Eine kritische Beurteilung der biologischen Aktivität heimischer Fusarium spp. auf natürlichen Substraten. http://hdl.handle.net/20.500.12708/32316 ( reposiTUm)

Kubicek, C. P. (2004). Abschlußbericht FWF Projekt 15131 -Arabinose catabolism in Trichoderma. http://hdl.handle.net/20.500.12708/32372 ( reposiTUm)

Kubicek, C. P. (2004). 1.Jahresbericht FWF Projekt 16143-Lactose metabolism in Trichoderma. http://hdl.handle.net/20.500.12708/32371 ( reposiTUm)

Kubicek, C. P. (2004). 1.Jahresbericht FWF Projekt 16601-Speziation in Trichoderma. http://hdl.handle.net/20.500.12708/32370 ( reposiTUm)

Kubicek, C. P. (2004). Endbericht GZ 45.515/1-VI/B7a2001. http://hdl.handle.net/20.500.12708/32369 ( reposiTUm)

Kubicek, C. P. (2004). 2.Zwischenbericht TrichoEST (EU Projekt). http://hdl.handle.net/20.500.12708/32368 ( reposiTUm)

Kubicek, C. P., & Seidl, V. (2003). Functional genomics and proteomics of Trichoderma antagonist strains for industry and agriculture. http://hdl.handle.net/20.500.12708/32186 ( reposiTUm)

Kubicek, C. P. (2002). Cellulose signalling to cellulase gene expression in Trichoderma. http://hdl.handle.net/20.500.12708/32174 ( reposiTUm)

Kubicek, C. P. (2002). Carbon catabolite repression in Aspergillus. http://hdl.handle.net/20.500.12708/32175 ( reposiTUm)