Danner, C., Karpenko, Y., Mach, R. L., & Mach-Aigner, A. R. (2025). Act1 out of Action: Identifying Reliable Reference Genes in Trichoderma reesei for Gene Expression Analysis. Journal of Fungi, 11(5), Article 396. https://doi.org/10.3390/jof11050396 ( reposiTUm)

Charest, J., Loebenstein, P., Mach, R. L., & Mach-Aigner, A. R. (2025). FunFEA: an R package for fungal functional enrichment analysis. BMC Bioinformatics, 26, Article 138. https://doi.org/10.1186/s12859-025-06164-7 ( reposiTUm)

Burger, I., Schmal, M., Peikert, K., Fourtis, L., Suster, C., Stanetty, C., Schnalzer, D., Hufnagel, B., Böttcher, T., Birner-Gruenberger, R., Mach, R. L., Mach-Aigner, A. R., Schittmayer-Schantl, M., & Zimmermann, C. (2025). Discovery of the antifungal compound ilicicolin K through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 18(1), Article 32. https://doi.org/10.1186/s13068-025-02628-3 ( reposiTUm)

Danner, C., Machado Mello De Sousa, T., Mach, R. L., & Mach-Aigner, A. R. (2025). The Impact of DNA Methylation in Trichoderma reesei on Cellulase Production and Strain Degeneration. Microorganisms, 13(3), Article 584. https://doi.org/10.3390/microorganisms13030584 ( reposiTUm)

Jadhav, R., Mach, R. L., & Mach-Aigner, A. R. (2024). Protein secretion and associated stress in industrially employed filamentous fungi. Applied Microbiology and Biotechnology, 108, Article 92. https://doi.org/10.1007/s00253-023-12985-4 ( reposiTUm)

Masi, A. L., Stark, G., Pfnier, J., Mach, R., & Mach-Aigner, A. (2024). Exploration of Trichoderma reesei as an alternative host for erythritol production. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 17, Article 90. https://doi.org/10.1186/s13068-024-02537-x ( reposiTUm)

Besleaga, M., Zimmermann, C., Ebner, K., Mach, R., Mach-Aigner, A., Geier, M., Glieder, A., Spadiut, O., & Kopp, J. (2024). Bi-directionalized promoter systems allow methanol-free production of hard-to-express peroxygenases with Komagataella Phaffii. Microbial Cell Factories, 23, Article 177. https://doi.org/10.1186/s12934-024-02451-9 ( reposiTUm)

Daza Serna, L. V., Toussaint, V., Mach-Aigner, A., Mach, R., Kessler, P., Bachmann, S., Pöppler, A.-C., Friedl, A., & Delidovich, I. (2024). Assessment of the Recovery of Erythritol Using Boronic Acid Polymers. Industrial & Engineering Chemistry Research, 63(47), 20677–20687. https://doi.org/10.1021/acs.iecr.4c01224 ( reposiTUm)

Jodlbauer, J., Schmal, M., Waltl, C., Rohr, T., Mach-Aigner, A. R., Mihovilovic, M. D., & Rudroff, F. (2024). Unlocking the potential of cyanobacteria: a high-throughput strategy for enhancing biocatalytic performance through genetic optimization. Trends in Biotechnology, 42(12), 1795–1818. https://doi.org/10.1016/j.tibtech.2024.07.011 ( reposiTUm)

Masi, A., Wögerbauer, K., Mach, R. L., & Mach-Aigner, A. R. (2024). Genomic deletions in Aureobasidium pullulans by an AMA1 plasmid for gRNA and CRISPR/Cas9 expression. Fungal Biology and Biotechnology, 11, Article 6. https://doi.org/10.1186/s40694-024-00175-4 ( reposiTUm)

Besleaga, M., Vignolle, G. A., Kopp, J., Spadiut, O., Mach, R. L., Mach-Aigner, A. R., & Zimmermann, C. (2023). Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris). Fungal Biology and Biotechnology, 10, Article 7. https://doi.org/10.1186/s40694-023-00154-1 ( reposiTUm)

Daza-Serna, L., Masi, A., Serna-Loaiza, S., Pfnier, J., Stark, G., Mach, R. L., Mach-Aigner, A. R., & Friedl, A. (2023). Detoxification strategy of wheat straw hemicellulosic hydrolysate for cultivating Trichoderma reesei: a contribution towards the wheat straw biorefinery. Biomass Conversion and Biorefinery, 13(18), 16495–16509. https://doi.org/10.1007/s13399-023-04099-8 ( reposiTUm)

Danner, C., Mach, R., & Mach-Aigner, A. R. (2023). The phenomenon of strain degeneration in biotechnologically relevant fungi. Applied Microbiology and Biotechnology, 107, 4745–4758. https://doi.org/10.1007/s00253-023-12615-z ( reposiTUm)

Knezevic, K., Daza Serna, L. V., Mach-Aigner, A., Mach, R., Friedl, A., Krampe, J., & Kreuzinger, N. (2023). Investigation of ion-exchange membranes and erythritol concentration for the desalination of erythritol culture broth by electrodialysis. Chemical Engineering and Processing: Process Intensification, 192, Article 109494. https://doi.org/10.1016/j.cep.2023.109494 ( reposiTUm)

Kreuter, J., Stark, G., Mach, R. L., Mach-Aigner, A. R., & Zimmermann, C. (2022). Fast and efficient CRISPR-mediated genome editing in Aureobasidium using Cas9 ribonucleoproteins. Journal of Biotechnology, 350, 11–16. https://doi.org/10.1016/j.jbiotec.2022.03.017 ( reposiTUm)

Machado Mello De Sousa, T., Gorsche, R., Jovanović, B., Mach, R. L., & Mach-Aigner, A. R. (2022). In Vitro Characterization of a Nuclear Receptor-like Domain of the Xylanase Regulator 1 from Trichoderma reesei. Journal of Fungi, 8(12), Article 1254. https://doi.org/10.3390/jof8121254 ( reposiTUm)

Vignolle, G. A., Mach, R., Mach-Aigner, A. R., & Zimmermann, C. (2022). FunOrder 2.0 – a method for the fully automated curation of co-evolved genes in fungal biosynthetic gene clusters. Frontiers in Fungal Biology. https://doi.org/10.3389/ffunb.2022.1020623 ( reposiTUm)

Daza-Serna, L., Knezevic, K., Kreuzinger, N., Mach-Aigner, A., Mach, R., Krampe, J., & Friedl, A. (2022). Recovery of Salts from Synthetic Erythritol Culture Broth via Electrodialysis: An Alternative Strategy from the Bin to the Loop. Sustainability, 14(2), 1–18. https://doi.org/10.3390/su14020734 ( reposiTUm)

Schmal, M., Girod, C., Yaver, D., Mach, R., & Mach-Aigner, A. (2022). A bioinformatic-assisted workflow for genome-wide identification of ncRNAs. NAR Genomics and Bioinformatics, 4(3), lqac059. https://doi.org/10.1093/nargab/lqac059 ( reposiTUm)

Vignolle, G. A., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2021). Genome Sequence of the Black Yeast-Like Strain Aureobasidium pullulans var. aubasidani CBS 100524. Microbiology Resource Announcements, 10(12). https://doi.org/10.1128/mra.01293-20 ( reposiTUm)

Masi, A., Mach, R. L., & Mach-Aigner, A. R. (2021). The pentose phosphate pathway in industrially relevant fungi: crucial insights for bioprocessing. Applied Microbiology and Biotechnology, 105(10), 4017–4031. https://doi.org/10.1007/s00253-021-11314-x ( reposiTUm)

Tomico Cuenca, I., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2021). An overview on current molecular tools for heterologous gene expression in Trichoderma. Fungal Biology and Biotechnology, 8(11). https://doi.org/10.1186/s40694-021-00119-2 ( reposiTUm)

Primerano, P., Juric, M., Mach, R., Mach-Aigner, A., & Derntl, C. (2021). Expanding the toolbox: another auxotrophic marker for targeted gene integrations in Trichoderma reesei. Fungal Biology and Biotechnology, 8(9). https://doi.org/10.1186/s40694-021-00116-5 ( reposiTUm)

Daza-Serna, L., Serna-Loaiza, S., Masi, A., Mach, R. L., Mach-Aigner, A. R., & Friedl, A. (2021). From the culture broth to the erythritol crystals: an opportunity for circular economy. Applied Microbiology and Biotechnology, 105(11), 4467–4486. https://doi.org/10.1007/s00253-021-11355-2 ( reposiTUm)

Martzy, R., Mello de Sousa, T. M., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2021). The phenomenon of degeneration of industrial Trichoderma reesei strains. Biotechnology for Biofuels, 14(193). https://doi.org/10.1186/s13068-021-02043-4 ( reposiTUm)

Vignolle, G. A., Schaffer, D., Zehetner, L., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2021). FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution. PLoS Computational Biology, 17(9), e1009372. https://doi.org/10.1371/journal.pcbi.1009372 ( reposiTUm)

Till, P., Derntl, C., Kiesenhofer, D. P., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2020). Regulation of gene expression by the action of a fungal lncRNA on a transactivator. RNA Biology, 17(1), 47–61. https://doi.org/10.1080/15476286.2019.1663618 ( reposiTUm)

Derntl, C., Mach, R., & Mach-Aigner, A. (2020). Application of the human estrogen receptor within a synthetic transcription factor in Trichoderma reesei. Fungal Biology and Biotechnology, 7(12). https://doi.org/10.1186/s40694-020-00102-3 ( reposiTUm)

V. D. dos Santos, A. C., Heydenreich, R., Derntl, C., Mach-Aigner, A. R., Mach, R. L., Ramer, G., & Lendl, B. (2020). Nanoscale Infrared Spectroscopy and Chemometrics Enable Detection of Intracellular Protein Distribution. Analytical Chemistry, 92(24), 15719–15725. https://doi.org/10.1021/acs.analchem.0c02228 ( reposiTUm)

Till, P., Toepel, J., Bühler, B., Mach, R. L., & Mach-Aigner, A. R. (2020). Regulatory systems for gene expression control in cyanobacteria. Applied Microbiology and Biotechnology, 104(5), 1977–1991. https://doi.org/10.1007/s00253-019-10344-w ( reposiTUm)

Vignolle, G. A., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2020). Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp. BMC Genomics, 21(258). https://doi.org/10.1186/s12864-020-6653-6 ( reposiTUm)

Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2019). Fusion transcription factors for strong, constitutive expression of cellulases and xylanases in Trichoderma reesei. Biotechnology for Biofuels, 12(231). https://doi.org/10.1186/s13068-019-1575-8 ( reposiTUm)

Till, P., Pucher, M. E., Mach, R. L., & Mach-Aigner, A. R. (2018). A long noncoding RNA promotes cellulase expression in Trichoderma reesei. Biotechnology for Biofuels, 11(78). https://doi.org/10.1186/s13068-018-1081-4 ( reposiTUm)

Regnat, K., Mach, R. L., & Mach-Aigner, A. R. (2018). Erythritol as sweetener-wherefrom and whereto? Applied Microbiology and Biotechnology, 102(2), 587–595. https://doi.org/10.1007/s00253-017-8654-1 ( reposiTUm)

Kiesenhofer, D. P., Mach, R. L., & Mach-Aigner, A. R. (2018). Influence of cis Element Arrangement on Promoter Strength in Trichoderma reesei. Applied and Environmental Microbiology, 84(1). https://doi.org/10.1128/aem.01742-17 ( reposiTUm)

Till, P., Mach, R. L., & Mach-Aigner, A. R. (2018). A current view on long noncoding RNAs in yeast and filamentous fungi. Applied Microbiology and Biotechnology, 102(17), 7319–7331. https://doi.org/10.1007/s00253-018-9187-y ( reposiTUm)

Rassinger, A., Gacek‑Matthews, A., Strauss, J., Mach, R. L., & Mach-Aigner, A. R. (2018). Truncation of the transcriptional repressor protein Cre1 in Trichoderma reesei Rut‑C30 turns it into an activator. Fungal Biology and Biotechnology, 5(15). https://doi.org/10.1186/s40694-018-0059-0 ( reposiTUm)

Rassinger, A., Machado Mello De Sousa, T., Regnat, K., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2017). Impact of xylanase expression-inducing compounds on DNA accessibility in Trichoderma reesei. MYCOSPHERE, 8(3), 432–444. https://doi.org/10.5943/mycosphere/8/3/5 ( reposiTUm)

Przylucka, A., Bayram Akcapinar, G., Bonazza, K., Machado Mello De Sousa, T., Mach-Aigner, A. R., Lobanov, V., Grothe, H., Kubicek, C. P., Reimhult, E., & Druzhinina, I. (2017). COMPARATIVE PHYSIOCHEMICAL ANALYSIS OF HYDROPHOBINS PRODUCED IN ESCHERICHIA COLI AND PICHIA PASTORIS. Colloids and Surfaces B: Biointerfaces, 159, 913–923. https://doi.org/10.1016/j.colsurfb.2017.08.058 ( reposiTUm)

Derntl, C., Guzmán-Chávez, F., Machado Mello De Sousa, T., Busse, H.-J., Driessen, A. J. M., Mach, R. L., & Mach-Aigner, A. R. (2017). In Vivo Study of the Sorbicillinoid Gene Cluster in Trichoderma reesei. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.02037 ( reposiTUm)

Kiesenhofer, D. P., Mach, R. L., & Mach-Aigner, A. R. (2017). Glucose Oxidase Production from Sustainable Substrates. Current Biotechnology, 6(3). https://doi.org/10.2174/2211550105666160712225517 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2017). Transcription factor Xpp1 is a switch between primary and secondary fungal metabolism. Proceedings of the National Academy of Sciences, 114(4), 560–569. http://hdl.handle.net/20.500.12708/146973 ( reposiTUm)

Omony, J., Mach-Aigner, A. R., van Straten, G., & van Boxtel, A. J. B. (2016). Quantitative modeling and analytic assessment of the transcription dynamics of the XlnR regulon in Aspergillus niger. BMC Systems Biology, 10(13). https://doi.org/10.1186/s12918-016-0257-4 ( reposiTUm)

Sloothaak, J., Tamayo-Ramos, J. A., Odoni, D. I., Laothanachareon, T., Derntl, C., Mach-Aigner, A. R., Martins dos Santos, V. A. P., & Schaap, P. J. (2016). Identification and functional characterization of novel xylose transporters from the cell factories Aspergillus niger and Trichoderma reesei. Biotechnology for Biofuels, 9(148). https://doi.org/10.1186/s13068-016-0564-4 ( reposiTUm)

Gupta, V. K., Stecca Steindorff, A., Graciano de Paula, R., Silva-Rocha, R., Mach-Aigner, A. R., Mach, R. L., & Silva, R. N. (2016). The Post-genomic Era of Trichoderma reesei: What’s Next? Trends in Biotechnology, 34(12), 970–982. https://doi.org/10.1016/j.tibtech.2016.06.003 ( reposiTUm)

Derntl, C., Rassinger, A., Srebotnik, E., Mach, R. L., & Mach-Aigner, A. R. (2016). Identification of the Main Regulator Responsible for Synthesis of the Typical Yellow Pigment Produced by Trichoderma reesei. Applied and Environmental Microbiology, 82(20), 6247–6257. http://hdl.handle.net/20.500.12708/149197 ( reposiTUm)

Mello-de-Sousa, T. M., Rassinger, A., Derntl, C., Poças-Fonseca, M. J., Mach, R. L., & Mach-Aigner, A. R. (2016). The Relation Between Promoter Chromatin Status, Xyr1 and Cellulase Expression in Trichoderma reesei. Current Genomics, 17(2), 145–152. https://doi.org/10.2174/1389202917666151116211812 ( reposiTUm)

Derntl, C., Rassinger, A., Srebotnik, E., Mach, R. L., & Mach-Aigner, A. R. (2015). Xpp1 regulates the expression of xylanases, but not of cellulases in Trichoderma reesei. Biotechnology for Biofuels, 8(112). https://doi.org/10.1186/s13068-015-0298-8 ( reposiTUm)

Derntl, C., Kiesenhofer, D., Mach, R. L., & Mach-Aigner, A. R. (2015). Novel Strategies for Genomic Manipulation of Trichoderma reesei with the Purpose of Strain Engineering. Applied and Environmental Microbiology, 81(18), 6314–6323. http://hdl.handle.net/20.500.12708/151012 ( reposiTUm)

Machado Mello De Sousa, T., Rassinger, A., Pucher, M. E., dos Santos Castro, L., Persinoti, G. F., Silva-Rocha, R., Poças-Fonseca, M. J., Mach, R. L., Nascimento Silva, R., & Mach-Aigner, A. R. (2015). The impact of chromatin remodelling on cellulase expression in Trichoderma reesei. BMC Genomics, 16(588). https://doi.org/10.1186/s12864-015-1807-7 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Rassinger, A., Poças-Fonseca, M. J., Mach, R. L., & Mach-Aigner, A. R. (2014). A truncated form of the Carbon catabolite repressor 1 increases cellulase production in Trichoderma reesei. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS, 7(129). https://doi.org/10.1186/s13068-014-0129-3 ( reposiTUm)

Jovanović, B., Mach, R. L., & Mach-Aigner, A. R. (2014). Erythritol production on wheat straw using Trichoderma reesei. AMB Express, 4(34). https://doi.org/10.1186/s13568-014-0034-y ( reposiTUm)

Reithner, B., Mach-Aigner, A. R., Herrera-Estrella, A., & Mach, R. L. (2014). Trichoderma atroviride Transcriptional Regulator Xyr1 Supports the Induction of Systemic Resistance in Plants. Applied and Environmental Microbiology, 80(17), 5274–5281. http://hdl.handle.net/20.500.12708/156890 ( reposiTUm)

Klaubauf, S., Narang, H. M., Post, H., Zhou, M., Brunner, K., Mach-Aigner, A. R., Mach, R. L., Heck, A. J. R., Altelaar, A. F. M., & de Vries, R. P. (2014). Similar is not the same: Differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi. Fungal Genetics and Biology, 72, 73–81. https://doi.org/10.1016/j.fgb.2014.07.007 ( reposiTUm)

Jovanović, B., Mach, R. L., & Mach-Aigner, A. R. (2013). Characterization of erythrose reductases from filamentous fungi. AMB Express, 3(43). https://doi.org/10.1186/2191-0855-3-43 ( reposiTUm)

Derntl, C., Gudynaite-Savitch, L., Calixte, S., White, T., Mach, R. L., & Mach-Aigner, A. R. (2013). Mutation of the Xylanase regulator 1 causes a glucose blind hydrolase expressing phenotype in industrially used Trichoderma strains. Biotechnology for Biofuels, 6(62). https://doi.org/10.1186/1754-6834-6-62 ( reposiTUm)

Gorsche, R., Jovanovic, B., Gudynaite-Savitch, L., Mach, R. L., & Mach-Aigner, A. R. (2013). A highly sensitive in vivo footprinting technique for condition-dependent identifcation of cis elements. Nucleic Acids Research, 42(1), e1–e1. https://doi.org/10.1093/nar/gkt883 ( reposiTUm)

Omony, J., Mach-Aigner, A. R., de Graaff, L. H., van Straten, G., & van Boxtel, A. J. B. (2012). Evaluation of Design Strategies for Time Course Experiments in Genetic Networks : Case Study of the XlnR Regulon in Aspergillus niger. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 9(5), 1316–1325. https://doi.org/10.1109/tcbb.2012.59 ( reposiTUm)

Mach-Aigner, A. R., Omony, J., Jovanovic, B., van Boxtel, A. J. B., & De Graaff, L. (2012). D-Xylose Concentration-Dependent Hydrolase Expression Profiles and the Function of CreA and XlnR in Aspergillus niger. Applied and Environmental Microbiology, 78(9), 3145–3155. http://hdl.handle.net/20.500.12708/163919 ( reposiTUm)

Steiger, M., Vitikainen, M., Uskonen, P., Brunner, K., Adam, G., Pakula, T., Penttilä, M. E., Saloheimo, M., Mach, R. L., & Mach-Aigner, A. R. (2011). Transformation System for Hypocrea jecorina (Trichoderma reesei) That Favors Homologous Integration and Employs Reusable Bidirectionally Selectable Markers. Applied and Environmental Microbiology, 77(1), 114–121. http://hdl.handle.net/20.500.12708/162158 ( reposiTUm)

Steiger, M. G., Mach-Aigner, A. R., Gorsche, R., Rosenberg, E. E., Mihovilovic, M. D., & Mach, R. L. (2011). Synthesis of an antiviral drug precursor from chitin using a saprophyte as a whole-cell catalyst. Microbial Cell Factories, 10(102). https://doi.org/10.1186/1475-2859-10-102 ( reposiTUm)

Mach-Aigner, A. R., Gudynaite-Savitch, L., & Mach, R. L. (2011). L-Arabitol Is the Actual Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei). Applied and Environmental Microbiology, 77(17), 5988–5994. http://hdl.handle.net/20.500.12708/162652 ( reposiTUm)

Pucher, M. E., Steiger, M. G., Mach, R. L., & Mach-Aigner, A. R. (2011). A modified expression of the major hydrolase activator in Hypocrea jecorina (Trichoderma reesei) changes enzymatic catalysis of biopolymer degradation. Catalysis Today, 167(1), 122–128. https://doi.org/10.1016/j.cattod.2010.12.038 ( reposiTUm)

Steiger, M. G., Mach, R. L., & Mach-Aigner, A. R. (2010). An accurate normalization strategy for RT-qPCR in Hypocrea jecorina (Trichoderma reesei). Journal of Biotechnology, 145(1), 30–37. https://doi.org/10.1016/j.jbiotec.2009.10.012 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M. E., & Mach, R. L. (2010). D-Xylose as a Repressor or Inducer of Xylanase Expression in Hypocrea jecorina (Trichoderma reesei). Applied and Environmental Microbiology, 76(6), 1770–1776. https://doi.org/10.1128/aem.02746-09 ( reposiTUm)

Mach-Aigner, A. R., Grosstessner-Hain, K., Pocas-Fonseca, M., Mechtler, K., & Mach, R. L. (2010). From an electrophoretic mobility shift assay to isolated transcription factors : a fast genomic-proteomic approach. BMC Genomics, 11, 644–653. http://hdl.handle.net/20.500.12708/167533 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M. E., Steiger, M. G., Bauer, G. E., Preis, S. J., & Mach, R. L. (2008). Transcriptional regulation of xyr1 , encoding the main regulator of the xylanolytic and cellulolytic enzyme system in Hypocrea jecorina. Applied and Environmental Microbiology, 74(21), 6554–6562. https://doi.org/10.1128/aem.01143-08 ( reposiTUm)

Stricker, A. R., Mach, R. L., & de Graaff, L. H. (2008). Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Applied Microbiology and Biotechnology, 78(2), 211–220. https://doi.org/10.1007/s00253-007-1322-0 ( reposiTUm)

Stricker, A. R., Wilhartitz, I., Farnleitner, A. H., & Mach, R. L. (2008). Development of a scorpion probe-based real-time PCR for the sensitive quantification of Bacteroides sp.ribosomal DNA from evaluation in spring water matrices. Microbiological Research, 163(2), 140–147. https://doi.org/10.1016/j.micres.2006.03.012 ( reposiTUm)

Stricker, A. R., Trefflinger, P., Aro, N., Penttilä, M., & Mach, R. L. (2008). Role of Ace2 (Activator of Cellulases 2) within the xyn2 transcriptosome of Hypocrea jecorina. Fungal Genetics and Biology, 45(4), 436–445. https://doi.org/10.1016/j.fgb.2007.08.005 ( reposiTUm)

Stricker, A. R., Steiger, M., & Mach, R. L. (2007). Xyr1 receives the lactose induction signal and regulates lactose metabolism in Hypocrea jecorina. FEBS Letters, 581, 3915–3920. http://hdl.handle.net/20.500.12708/169485 ( reposiTUm)

Rauscher, R., Würleitner, E., Wacenovsky, C., Aro, N., Stricker, A. R., Zeilinger, S., Kubicek, C. P., Penttilä, M. E., & Mach, R. L. (2006). Transciptional Regulation of xyn1, Encoding Xylanase I, in Hypocrea jecorina. Eukaryotic Cell, 5(7), 447–456. http://hdl.handle.net/20.500.12708/173250 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., Würleitner, E., & Mach, R. L. (2006). Xyr1(Xylanase Regulator 1) Regulates both the Hydrolytic Enzyme System and D-Xylose Metabolism in Hypocrea jecorina. Eukaryotic Cell, 5(12), 1–10. http://hdl.handle.net/20.500.12708/173249 ( reposiTUm)

Till, P., Martzy, R., Derntl, C., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2020). lnteraction of a fungal lncRNA with a transactivator enhances cellulase production in Trichoderma reesei. In Program & Abstracts (pp. 257–258). http://hdl.handle.net/20.500.12708/49587 ( reposiTUm)

Hochenegger, N., Vignolle, G. A., Mach, R. L., Druzhinina, I., Mach-Aigner, A. R., & Derntl, C. (2020). Bioprospecting a newly identified fungus from the Borneo rain forest regarding its bioactive properties. In Program & Abstracts (p. 222). http://hdl.handle.net/20.500.12708/49582 ( reposiTUm)

Masi, A., Mach, R. L., & Mach-Aigner, A. R. (2020). Understanding parameters enhancing erythritol consumption, a prerequisite to the development of an efflcient erythritol production process in T. reesei. In Program & Abstracts (p. 234). http://hdl.handle.net/20.500.12708/49583 ( reposiTUm)

Regnat, K., Masi, A., Mach, R. L., & Mach-Aigner, A. R. (2020). Erythritol in Trichoderma reesei - Construction of a multirecombinant production strain. In Program & Abstracts (p. 241). http://hdl.handle.net/20.500.12708/50773 ( reposiTUm)

Vignolle, G. A., Mach, R. L., Mach-Aigner, A. R., & Derntl, C. (2020). Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp. In ECFG15 - 15th European Conference on Fungal Genetics (Program and Abstracts). ECFG15 - 15th European Conference on Fungal Genetics, Rom, Italy. http://hdl.handle.net/20.500.12708/50775 ( reposiTUm)

Derntl, C., Hochenegger, N., Seidl, B. K., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2020). A pair of transcription factors regulates the switch between primary and secondary metabolism. In Program & Abstracts (p. 242). http://hdl.handle.net/20.500.12708/50774 ( reposiTUm)

Tomico Cuenca, I., Derntl, C., Seidl, B. K., Mach, R. L., Schuhmacher, R., & Mach-Aigner, A. R. (2020). Fusion transcription factors as a tool for controlled gene overexpression in Trichoderma reesei. In Program & Abstracts (p. 76). http://hdl.handle.net/20.500.12708/50770 ( reposiTUm)

Regnat, K., Beisl, S., Friedl, A., Mach, R. L., & Mach-Aigner, A. R. (2019). Erythritol from straw A multilevel feasibility study in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50553 ( reposiTUm)

Till, P., Pucher, M., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2019). Transactivator and long non-coding RNA meet for regulation of cellulase formation in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50550 ( reposiTUm)

Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2019). Usage of an estradiol-inducible fusion transactivation domain for controlled gene expression in Trchoderma reesei. In Abstract Book (p. 1). http://hdl.handle.net/20.500.12708/50429 ( reposiTUm)

Till, P., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2019). LncRNA and transactivator meet for regulation of cellulase-encoding gene expression. In Abstract Book (p. 1). http://hdl.handle.net/20.500.12708/50409 ( reposiTUm)

Hochenegger, N., Mach, R. L., Druzhinina, I., Mach-Aigner, A. R., & Derntl, C. (2019). Bioprospecting of fungi from the Borneo rain forest regarding their bioactive properties. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50425 ( reposiTUm)

Derntl, C., Hochenegger, N., Seidl, B. K., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2019). Regulation of the Primary and Secondary Metabolism in Fungi by a pair of Transcription Factors. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50551 ( reposiTUm)

Vignolle, G. A., Seidl, B. K., Mach, R. L., Schuhmacher, R., Mach-Aigner, A. R., & Derntl, C. (2019). New approaches in genome mining reveal conserved RiPPs in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50554 ( reposiTUm)

Seidl, B. K., Derntl, C., Mach, R. L., Mach-Aigner, A. R., & Schuhmacher, R. (2019). An LC-HRMS Based Metabolomics Workflow to Investigate the Sorbicillinoid Biosynthesis in Trichoderma reesei. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50552 ( reposiTUm)

Tomico Cuenca, I., Derntl, C., Seidl, B. K., Mach, R. L., Schuhmacher, R., & Mach-Aigner, A. R. (2019). Development of synthetic transcription factors to activate biosynthetic gene clusters. In 18. Österreichische Chemietage (p. 1). http://hdl.handle.net/20.500.12708/50549 ( reposiTUm)

Derntl, C., Mello de Sousa, T. M., Regnat, K., Rassinger, A., Mach, R. L., & Mach-Aigner, A. R. (2018). Synthetic transcription factors and expression system in Trichoderma reesei. In Abstract Book (p. 222). http://hdl.handle.net/20.500.12708/50382 ( reposiTUm)

Rassinger, A., Mello de Sousa, T. M., Regnat, K., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2017). Impact of inducer molecules on DNA accessibility in cellulase and xylanase expression in Trichoderma reesei. In Book of Abstracts (pp. 76–77). http://hdl.handle.net/20.500.12708/49816 ( reposiTUm)

Mello de Sousa, T. M., Derntl, C., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2017). When more is less: high productivity contributes to strain degeneration in Trichoderma reesei. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/49996 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., & Mach-Aigner, A. R. (2017). A new activator of cellulase expression in Trichoderma reesei. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/49995 ( reposiTUm)

Lobanov, V., Przylucka, A., Akcapinar, G. B., Bonazza, K., Mello de Sousa, T. M., Mach-Aigner, A. R., Grothe, H., Reimhult, E., & Druzhinina, I. (2017). Production of Fungal Surface-Active Proteins in Three Microbial Cell Factories. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/50020 ( reposiTUm)

Akcapinar, G. B., Camposeo, T., Berezhinskiy, V., Przylucka, A., Cai, F., Mello de Sousa, T. M., Grothe, H., Reimhult, E., Mach-Aigner, A. R., Shen, Q., & Druzhinina, I. (2017). Learning from fungi: new applications of the natural and engineered surfaceactive proteins from fungi. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/50021 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2017). A pleiotropic regulator of the Primary and Secondary Metabolism in Fungi. In Book of Abstracts (p. 1). http://hdl.handle.net/20.500.12708/50001 ( reposiTUm)

Akcapinar, G. B., Przylucka, A., Cai, F., Mello de Sousa, T. M., Grothe, H., Reimhult, E., Mach-Aigner, A. R., Shen, Q., & Druzhinina, I. (2017). Learning from nature: establishment of a library of natural and rationally designed hydrophobins from Trichoderma spp. with diverse surface activity. In Abstract Book (p. 64). http://hdl.handle.net/20.500.12708/48603 ( reposiTUm)

Przylucka, A., Akcapinar, G. B., Bonazza, K., Mello de Sousa, T. M., Mach-Aigner, A. R., Reimhult, E., Grothe, H., Kubicek, C. P., & Druzhinina, I. (2017). Expression platforms impact the surface modulating properties of Trichoderma class II hydrophobins. In Abstract Book (p. 113). http://hdl.handle.net/20.500.12708/50025 ( reposiTUm)

Rassinger, A., Mello de Sousa, T. M., Regnat, K., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2016). Impact of inducer molecules on DNA accessibility in cellulase and xylanase gene expression in Trichoderma reesei. In Abstract Book (p. 370). http://hdl.handle.net/20.500.12708/49338 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., & Mach-Aigner, A. R. (2016). A hitherto unknown hydrolase activator in Trichoderma reesei. In Abstract Book (p. 352). http://hdl.handle.net/20.500.12708/49337 ( reposiTUm)

Kiesenhofer, D., Mach, R. L., & Mach-Aigner, A. R. (2016). GoxA production from wheat straw using an engineered Trichoderma reesei strain. In Abstract Book (p. 403). http://hdl.handle.net/20.500.12708/49339 ( reposiTUm)

Mello de Sousa, T. M., Derntl, C., Gorsche, R., Regnat, K., Jovanovic, B., Marchetti-Deschmann, M., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2016). The transactivator Xyr1 of Trichoderma reesei functions in a nuclear receptorlike way. In Abstract Book (p. 428). http://hdl.handle.net/20.500.12708/49340 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2016). The transcription factor Xpp1 is a repressor of the fungal secondary metabolism. In Abstract Book (p. 546). http://hdl.handle.net/20.500.12708/49341 ( reposiTUm)

Akcapinar, G. B., Przylucka, A., Cai, F., Mello de Sousa, T. M., Grothe, H., Reimhult, E., Mach-Aigner, A. R., Shen, Q., & Druzhinina, I. (2016). Rational design of novel Trichoderma hydrophobins for industrial applications. In Abstract Book (p. 424). http://hdl.handle.net/20.500.12708/49461 ( reposiTUm)

Zeki, S., Mayer, R., Keiblinger, K., Schuster, N., Kiesenhofer, D., Mach-Aigner, A. R., Mach, R. L., Reischer, G., & Farnleitner, A. H. (2015). Design and application of a genetically modified E. coli strain for assessment of DNA extraction and recovery efficiencies in Bacteroidetes based MST studies. In Proceedings (pp. 77–79). http://hdl.handle.net/20.500.12708/49106 ( reposiTUm)

Derntl, C., Mello de Sousa, T. M., Kiesenhofer, D., Rassinger, A., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2015). How to modify regulatory proteins for desired gene expression? In Abstract Book (p. 22). http://hdl.handle.net/20.500.12708/48933 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2014). Characterization of a Nuclear Receptor-like Domain of the Xylanase Regulator 1. In Book of Abstracts (p. 198). http://hdl.handle.net/20.500.12708/48638 ( reposiTUm)

Mach-Aigner, A. R., Gorsche, R., Mello de Sousa, T. M., Pocas-Fonseca, M., & Mach, R. L. (2014). What Makes Rut-C30 an Appealing Parent of Industry Strains? In Book of Abstracts (p. 231). http://hdl.handle.net/20.500.12708/48640 ( reposiTUm)

Derntl, C., Ortner, K., Mach, R. L., & Mach-Aigner, A. R. (2014). Identification of Crucial Motifs in the Transcription Factors Ace1 and Xyr1 in Trichoderma reesei. In Book of Abstracts (p. 210). http://hdl.handle.net/20.500.12708/48639 ( reposiTUm)

Mach, R. L., Mach-Aigner, A. R., Derntl, C., Mello de Sousa, T. M., Rassinger, A., Till, P., & Kiesenhofer, D. (2014). Complex, Multilevel Mechanisms Regulate Expression of Hydrolase Encoding Genes in Trichoderma. In TG2014 Programme & Abstracts (p. 17). http://hdl.handle.net/20.500.12708/48693 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Rassinger, A., Pocas-Fonseca, M., Mach, R. L., & Mach-Aigner, A. R. (2014). A truncation of Cre1 from T. reesei leads to a different functionality. In TG2014 Programme & Abstracts (p. 23). http://hdl.handle.net/20.500.12708/48694 ( reposiTUm)

Derntl, C., Gudynaite-Savitch, L., Calixte, S., White, T., Mach-Aigner, A. R., & Mach, R. L. (2013). A point mutation in Xyr1 causes a glucose-blind, inducer independent enzyme production phenotype in Trichoderma reesei. In XI International Fungal Biology Conference (p. 235). http://hdl.handle.net/20.500.12708/48416 ( reposiTUm)

Mello de Sousa, T. M., Rassinger, A., Mach, R. L., & Mach-Aigner, A. R. (2013). Chromatin rearrangement analysis of Xyr1 regulon genes in Trichoderma reesei. In XI International Fungal Biology Conference (p. 237). http://hdl.handle.net/20.500.12708/48417 ( reposiTUm)

Omony, J., Mach-Aigner, A. R., Jovanovic, B., van Straten, G., van Boxtel, A. J. B., & De Graaff, L. (2012). Modeling the XlnR regulon of Aspergillus niger. In Meeting Abstracts (p. 61). http://hdl.handle.net/20.500.12708/47846 ( reposiTUm)

Gorsche, R., Mach, R. L., & Mach-Aigner, A. R. (2012). High Throughput in vivo Footprinting - an improved Method to detect Protein-DNA Interactions. In Meeting Abstracts (p. 109). http://hdl.handle.net/20.500.12708/47847 ( reposiTUm)

Mello de Sousa, T. M., Gorsche, R., Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2012). Complex, multilevel mechanisms regulate expression of hydrolase encoding genes in Trichoderma. In www.furb.br (p. 1). http://hdl.handle.net/20.500.12708/47967 ( reposiTUm)

Gorsche, R., Mello de Sousa, T. M., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2012). Partner search and relationship: how to find regulatory elements and proteins and to monitor their interaction. In www.furb.br (p. 1). http://hdl.handle.net/20.500.12708/47908 ( reposiTUm)

Derntl, C., Steiger, M., Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2012). A novel utilisation of the biopolymer chitin : Generation of a pharmaceutically relevant fine chemical by a whole-cell catalyst approach in Trichoderma. In TG 2012 Programme and Abstracts (p. 39). http://hdl.handle.net/20.500.12708/47960 ( reposiTUm)

Gorsche, R., Derntl, C., Mach, R. L., & Mach-Aigner, A. R. (2012). Improving in vivo Footprinting - finding a more sensitive way to detect Protein-DNA Interactions. In TG 2012 Programme and Abstracts (p. 81). http://hdl.handle.net/20.500.12708/47957 ( reposiTUm)

Klaubauf, S., Narang, H. M., Battaglia, E., Kobayashi, T., Brunner, K., Mach-Aigner, A. R., Mach, R. L., & De Vries, R. (2012). Similar Is Not The Same : Differences In The Function Of The (Hemi -) Cellulolytic Regulator XlnR (Xlr1/Xyr1) In Filamentous Fungi. In Meeting Abstracts (p. 122). http://hdl.handle.net/20.500.12708/47848 ( reposiTUm)

Mach-Aigner, A. R., Omony, J., Jovanovic, B., van Boxtel, A. J. B., & De Graaff, L. (2012). D-Xylose Concentration-dependent Hydrolase Expression Profiles and the According Role of CreA and XlnR in Aspergillus niger. In Meeting Abstracts (p. 224). http://hdl.handle.net/20.500.12708/47849 ( reposiTUm)

Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2012). Regulation of (Hemi-) Cellulases in Trichoderma reesei. In Topcial Issues of Rational Use of Natural Resources Vol. II (pp. 116–117). http://hdl.handle.net/20.500.12708/47851 ( reposiTUm)

Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2011). A High Throughput in vivo Footprinting Technique to detect Protein-DNA Interactions. In Abstract Booklet. 2011 Einsteins in the City, New York, USA, Non-EU. http://hdl.handle.net/20.500.12708/47374 ( reposiTUm)

Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2011). Transcriptional regulation of cellulolytic and hemicellulolytic enzymes in Trichoderma reesei. In Proceedings Probleme der Ausnutzung von Bodenschätzen, Band II (pp. 120–121). http://hdl.handle.net/20.500.12708/47391 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., & Mach, R. L. (2011). From the biopolymer chitin to a highly valuable, pharmaceutically relevant fine chemical : applying an integrated bioprocess technology approach to Trichoderma. In 19#^{th} Annual Meeting of the BioEnvironmental Polymer Society. 19#^{th} Annual Meeting of the BioEnvironmental Polymer Society (BEPS), Wien, Austria. http://hdl.handle.net/20.500.12708/47536 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., & Mach, R. L. (2010). From chitin to a highly valuable, pharmaceutically relevant fine chemical : inserting a multi-step enzyme cascade into Trichoderma. In Meeting Abstracts (p. 159). http://hdl.handle.net/20.500.12708/46854 ( reposiTUm)

Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2010). Engineering an N-acetylneuraminic acid synthesis pathway into Trichoderma. In Meeting Abstracts (p. 160). http://hdl.handle.net/20.500.12708/46855 ( reposiTUm)

Steiger, M., Vitikainen, M., Brunner, K., Adam, G., Saloheimo, M., Mach, R. L., & Mach-Aigner, A. R. (2010). A transformation system for Hypocrea (Trichoderma) that favours homologous integration and that uses reusable bi-directionally selectable markers. In Book of Abstracts. Trichoderma - Molecular mechanisms and applications of biocontrol in agriculture, Technion, Haifa, Israel, Non-EU. http://hdl.handle.net/20.500.12708/47017 ( reposiTUm)

Mach, R. L., Steiger, M., & Mach-Aigner, A. R. (2010). Engineering an N-acetylneuraminic acid Pathway into Trichoderma spp. : From Chitin to the Zanamivir Precursor N-acetylneuraminic Acid by Whole. In ibio 2010 (p. 205). http://hdl.handle.net/20.500.12708/47015 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M., Gorsche, R., & Mach, R. L. (2010). Deregulating Hydrolase Production in the Industrial Important Fungus Trichoderma Reesei - from Gene Regulation to Strain Improvement. In ibio 2010 (p. 234). http://hdl.handle.net/20.500.12708/47016 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., Gorsche, R., & Mach, R. L. (2010). Synthesis of N-acetyl neuraminic acid from Chitin using Trichoderma as whole-cell catalyst. In Book of Abstracts (p. 48). http://hdl.handle.net/20.500.12708/46858 ( reposiTUm)

Mach, R. L., Pucher, M., & Mach-Aigner, A. R. (2010). New generation of strain improvement for hydrolase production via genetic engineering : a case study Trichoderma. In Book of Abstracts (p. 22). http://hdl.handle.net/20.500.12708/46857 ( reposiTUm)

Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2010). D-xylose : repressor or inducer of xylanase expression in Hypocrea jecorina (Trichoderma reesei). In Meeting Abstracts (p. 74). http://hdl.handle.net/20.500.12708/46856 ( reposiTUm)

Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2010). Improvement of cultivation conditions for high enzyme production in the industrially important fungus Trichoderma reesei. In Proceedings (pp. 383–384). http://hdl.handle.net/20.500.12708/46786 ( reposiTUm)

Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2010). Reference genes for Hypocrea jecorina. In Proceedings (pp. 415–416). http://hdl.handle.net/20.500.12708/46787 ( reposiTUm)

Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2009). Towards hydrolase production on pentose sugars : the xylose dependent interplay of the two key opponents Xyr1 and Cre1 in Trichoderma reesei. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46613 ( reposiTUm)

Mach-Aigner, A. R., Steiger, M., & Mach, R. L. (2009). From the biopolymer chitin to a highly valuable, pharmaceutically relevant fine chemical : Applying an integrated bioprocess technology approach to Trichoderma. In The Third Annual Workshop of COST FP0620 - Abstract Book (p. 54). http://hdl.handle.net/20.500.12708/46619 ( reposiTUm)

Mach, R. L., Steiger, M., & Mach-Aigner, A. R. (2009). Heterologous expression of the GlcNAc 2-epimerase and neuNAc-synthase in Trichoderma to construct a N-Acetylneuraminic acid synthesis pathway. In The Third Annual Workshop of COST FP0620 - Abstract Book (p. 40). http://hdl.handle.net/20.500.12708/46620 ( reposiTUm)

Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2009). Defining the norm : reference genes for RT-qPCR in Trichoderma. In 9#^{th} VAAM Symposium -Molecular Biology of Fungi - Conference Book. 9#^{th} VAAM Symposium -Molecular Biology of Fungi, Münster, Deutschland, EU. http://hdl.handle.net/20.500.12708/46621 ( reposiTUm)

Pucher, M., Bauer, G., Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2008). Investigations of Xyr1 (Xylanase regulator 1), the main transcriptional regulator of the xylanaolytic and cellulolytic enzymes in Hypocrea jecorina (Trichoderma reesei). In Enzymatic fiber modification and hydrolysis (p. 38). http://hdl.handle.net/20.500.12708/46508 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M., Steiger, M., & Mach, R. L. (2008). Xyr1 is a major target to genetically engineer the Hydrolase Profile of Trichoderma reesei. In ENZITEC 2008 - VIII Seminario Brasileiro de Tecnologia Enzimatica (p. 21). http://hdl.handle.net/20.500.12708/46275 ( reposiTUm)

Mach-Aigner, A. R., Pucher, M., Steiger, M., & Mach, R. L. (2008). From Gene Regulation to Strain Improvement - lessons from the Industrial Important Fungus Trichoderma reesei. In ENZITEC 2008 - VIII Seminario Brasileiro de Tecnologia Enzimatica (p. 20). http://hdl.handle.net/20.500.12708/46274 ( reposiTUm)

Steiger, M., Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2008). Learning more about the Gene Regulation of Hydrolytic enzyme - encoding Genes in an industrial relevant Fungus. In Enzymatic fiber modification and hydrolysis (p. 37). http://hdl.handle.net/20.500.12708/46509 ( reposiTUm)

Steiger, M., Pucher, M., Mach-Aigner, A. R., & Mach, R. L. (2008). Learning more about the Gene Regulation of Hydrolytic enzyme - encoding Genes in an industrial relevant Fungus. In Junior Scientist Conference 2008 - Proceedings (pp. 159–160). http://hdl.handle.net/20.500.12708/46276 ( reposiTUm)

Pucher, M., Bauer, G., Steiger, M., Mach, R. L., & Mach-Aigner, A. R. (2008). Investigations of Xyr1 (Xylanase regulator 1), the main transcriptional regulator of the xylanaolytic and cellulolytic enzymes in Hypocrea jecorina (Trichoderma reesei). In Junior Scientist Conference 2008 - Proceedings (pp. 161–162). http://hdl.handle.net/20.500.12708/46277 ( reposiTUm)

Zimmermann, C., Till, P., Danner, C., & Mach-Aigner, A. R. (2022). Genetic Regulation Networks in Cellulase and Hemicellulase Production in an Industrially Applied Cellulase Producer Trichoderma reesei. In V. Bisaria (Ed.), Handbook of Biorefinery Research and Technology. Springer. https://doi.org/10.1007/978-94-007-6724-9_25-1 ( reposiTUm)

Chenthamara, K., Druzhinina, I. S., Rahimi, M. J., Grujic, M., & Cai, F. (2020). Ecological Genomics and Evolution of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 1–21). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_1 ( reposiTUm)

Steiger, M. G. (2020). Flow Cytometry for Filamentous Fungi. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 147–155). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_13 ( reposiTUm)

Rahimi, M. J., Cai, F., Grujic, M., Chenthamara, K., & Druzhinina, I. S. (2020). Molecular Identification of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 157–175). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_14 ( reposiTUm)

Seiboth, B. (2020). In Silico Gene Analysis and Oligonucleotide Design for the Construction of Expression Vectors. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 297–309). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_20 ( reposiTUm)

Till, P. (2020). RNA Characterization in Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 191–235). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_16 ( reposiTUm)

Schmoll, M., & Zeilinger, S. (2020). Resistance Marker- and Gene Gun-Mediated Transformation of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 55–62). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_4 ( reposiTUm)

Tomico Cuenca, I., & Derntl, C. (2020). Use of Auxotrophic Markers for Targeted Gene Insertions in Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 63–72). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_5 ( reposiTUm)

Martzy, R., & Mach-Aigner, A. R. (2020). The Potential of Synthetic Biology for Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 45–54). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_3 ( reposiTUm)

Jovanović, B. (2020). Batch Cultivation of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 113–118). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_10 ( reposiTUm)

Linke, R. B. (2020). Sexual Crossing of Trichoderma reesei. In A. R. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 79–85). Springer Science + Business Media. https://doi.org/10.1007/978-1-0716-1048-0_7 ( reposiTUm)

Mach-Aigner, A. R., & Martzy, R. (2020). Preface. In A. Mach-Aigner & R. Martzy (Eds.), Trichoderma reesei (pp. 5–5). Springer Science + Business Media. http://hdl.handle.net/20.500.12708/30354 ( reposiTUm)

Kiesenhofer, D., Mach-Aigner, A. R., & Mach, R. L. (2016). Understanding the Mechanism of Carbon Catabolite Repression to Increase Protein Production in Filamentous Fungi. In M. Schmoll & C. Dattenböck (Eds.), Gene Expression Systems in Fungi: Advancements and Applications (pp. 275–288). Springer International Publishing Switzerland 2016. https://doi.org/10.1007/978-3-319-27951-0_12 ( reposiTUm)

Kiesenhofer, D., Mach-Aigner, A. R., & Mach, R. L. (2015). Fungal Metabolic Engineering for Biofuel Production. In R. Nascimento Silva (Ed.), Mycology: Current and Future Developments (pp. 128–147). Bentham Science Publishers. https://doi.org/10.2174/9781681080741115010008 ( reposiTUm)

Mello de Sousa, T. M., Mach, R. L., & Mach-Aigner, A. R. (2015). A Recyclable and Bidirectionally Selectable Marker System for Transformation of Trichoderma. In M. A. van den Berg & K. Maruthachalam (Eds.), Genetic Transformation Systems in Fungi, Volume 2 (pp. 169–174). Springer International Publishing. https://doi.org/10.1007/978-3-319-10503-1_14 ( reposiTUm)

Derntl, C., Mach-Aigner, A. R., & Mach, R. L. (2014). Trichoderma Proteins with Disruption Activity on Cellulosic Substrates. In V. K. Gupta, M. Schmoll, A. Herrera-Estrella, R. S. Upadhyay, I. Druzhinina, & M. G. Tuohy (Eds.), Biotechnology and Biology of Trichoderma (pp. 309–317). Elsevier B.V. https://doi.org/10.1016/b978-0-444-59576-8.00021-7 ( reposiTUm)

Gorsche, R., Mach-Aigner, A. R., & Mach, R. L. (2013). Trichoderma as Cell Factories. In Trichoderma Biology and Applications (pp. 280–291). CABI. http://hdl.handle.net/20.500.12708/27947 ( reposiTUm)

Mach-Aigner, A. R., & Martzy, R. (Eds.). (2020). Trichoderma reesei - Methods and Protocols. Springer Science + Business Media. http://hdl.handle.net/20.500.12708/24751 ( reposiTUm)

Burger, I., Schmal, M., Fourtis, L., Peikert, K., Suster, C., Stanetty, C., Schnalzer, D., Birner-Grünberger, R., Mach, R., Mach-Aigner, A., Derntl, C., & Schittmayer-Schantl, M. (2024, September 23). Discovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei [Conference Presentation]. APMRS/CEEPC APMRS-CEEPC 2024, Wien, Austria. http://hdl.handle.net/20.500.12708/207567 ( reposiTUm)

Schneckenleitner, N., Mach, R., Mach-Aigner, A., & Zimmermann, C. (2023, September 22). Contribution of DHN melanin to survival and growth of Neoarthrinium moseri in extreme environments [Conference Presentation]. IUBMB Focused Meeting on Extremophilic Fungi (FUN-EX 2023), Ljubljana, Slovenia. ( reposiTUm)

Hochenegger, N., Mach, R., Mach-Aigner, A., & Zimmermann, C. (2023, March 7). On the interaction of SREBP Sah2 and the pleiotropic regulator Xpp1 in Trichoderma reesei [Poster Presentation]. 16th European Conference on Fungal Genetics, Innsbruck, Austria. ( reposiTUm)

Masi, A. L., Stark, G., Pfnier, J., Daza Serna, L. V., Mach-Aigner, A., & Mach, R. (2022, September 22). Erythritol production by the saprobe Trichoderma reesei: screening and optimization using Design of Experiments to better understand the effect of nitrogen source, carbon source, pH and temperature. [Conference Presentation]. 14th ÖGMBT Annual Meeting, Vienna, Austria. ( reposiTUm)

Daza Serna, L. V., Masi, A. L., Serna Loaiza, S., Pfnier, J., Stark, G., Mach, R., Mach-Aigner, A., & Friedl, A. (2022, June 15). Detoxification strategy of wheat straw hemicellulosic hydrolysate for cultivating Trichoderma reesei: a contribution towards the wheat biorefinery. [Conference Presentation]. Corfu 2022 - 9th International Conference on Sustainable Solid Waste Management, Corfu, Greece. ( reposiTUm)

Mach-Aigner, A. R. (2021). Die Rolle der Molekulargenetik bei der Entwicklung grüner Syntheseverfahren. 5. Fachdialog Grüne Chemie, Wien, Austria. http://hdl.handle.net/20.500.12708/101651 ( reposiTUm)

Daza Serna, L. V., Knezevic, K., Kreuzinger, N., Mach-Aigner, A. R., Mach, R., Krampe, J., & Friedl, A. (2021, October 13). Recovery of salts from synthetic erythritol culture broth via electrodialysis: an alternative strategy from the bin to the loop. [Conference Presentation]. 16th Conference of Sustainable Development of Energy, Water and Environment Systems, Dubrovnik, Croatia. http://hdl.handle.net/20.500.12708/154087 ( reposiTUm)

dos Santos, A. C. V. D., Heydenreich, R., Derntl, C., Mach-Aigner, A. R., Mach, R. L., Ramer, G., & Lendl, B. (2020). Near-field IR detection enables nanoscale computational staining. SciX 2020, Online, Unknown. http://hdl.handle.net/20.500.12708/101563 ( reposiTUm)

Mach-Aigner, A. R. (2018). Partner search and relationship: how university meets industry. Vienna Knowledge Exchange Conference, Wien, Austria. http://hdl.handle.net/20.500.12708/100751 ( reposiTUm)

Mello de Sousa, T. M., Derntl, C., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). Strain degeneration in Trichoderma reesei is triggered by high protein productivity and influenced by DNA methylation. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50134 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). A long noncoding RNA promotes cellulase expression in Trichoderma reesei. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50135 ( reposiTUm)

Till, P., Pucher, M., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). Long non-coding RNA meets transactivator for regulation of cellulase expression. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50132 ( reposiTUm)

Derntl, C., Kluger, B., Büschl, C., Schuhmacher, R., Mach, R. L., & Mach-Aigner, A. R. (2018). lnducible expression of secondary metabolites using a synthetic transcription factor in an essentially background-free system. In http://www.ecfg14.org/scientific-program/ (p. 1). http://hdl.handle.net/20.500.12708/50133 ( reposiTUm)

Till, P., Pucher, M., Kiesenhofer, D., Mach, R. L., Yaver, D., & Mach-Aigner, A. R. (2018). Regulatory interplay of a long non-coding RNA and a transactivator in a filamentous fungus. In https://rnasociety.dk/events/4th-annual-rna-meeting (p. 1). http://hdl.handle.net/20.500.12708/50293 ( reposiTUm)

Mach-Aigner, A. R. (2017). Regulation of secondary metabolism in Trichoderma reesei. Jahrestagung der Deutschen Gesellschaft für Genetik, Bochum, Germany. http://hdl.handle.net/20.500.12708/100435 ( reposiTUm)

Mach-Aigner, A. R. (2012). Burnout in der Biotechnologie: Stammdegeneration mit epigenetischen Ursachen? Workshop Kulturelle Faktoren der Vererbung III: Verfahren, Berlin, Deutschland, EU. http://hdl.handle.net/20.500.12708/99056 ( reposiTUm)

Mello de Sousa, T. M., Paes, B. G., Mach-Aigner, A. R., Mach, R. L., & Pocas-Fonseca, M. (2012). DNA methylation influence on glycoside hydrolase genes expression in Humicola grisea var. thermoidea. IV Encontro Nacional de Epigenética, Sao Paulo, Brasilien, Non-EU. http://hdl.handle.net/20.500.12708/98867 ( reposiTUm)

Stricker, A. R., Grosstessner-Hain, K., & Mach, R. L. (2005). Xyr1 is the main regulator of the xylanolytic and cellolytic enzyme system in Trichoderma reesei. VAAM - Symposium, Bochum, Austria. http://hdl.handle.net/20.500.12708/96869 ( reposiTUm)

Stricker, A. R., Farnleitner, A. H., Wilhartitz, I., Hornek, R., & Mach, R. L. (2003). Bacteroides sp. DNA detection in feces with Scorpion-Primer in Quantitative Real-Time PCR. iCycler User Meeting, Wien, Austria. http://hdl.handle.net/20.500.12708/96178 ( reposiTUm)

Burger, I., Schmal, M., Peikert, K., Fourtis, L., Suster, C., Stanetty, C., Schnalzer, D., Birner-Gruenberger, R., Mach, R. L., Mach-Aigner, A. R., Schittmayer, M., & Zimmermann, C. (2024). Discovery of a novel antifungal compound, ilicicolin K, through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei. bioRxiv. https://doi.org/10.1101/2024.06.20.599701 ( reposiTUm)

Mach-Aigner, A. (2015). Usage of Trichoderma reesei as an expression platform [Professorial Dissertation, Technische Universität Wien]. reposiTUm. http://hdl.handle.net/20.500.12708/158916 ( reposiTUm)