Charest, J., Loebenstein, P., Mach, R. L., & Mach-Aigner, A. R. (2025). FunFEA: an R package for fungal functional enrichment analysis. BMC Bioinformatics, 26, Article 138. https://doi.org/10.1186/s12859-025-06164-7
The functional annotation of fungal genomes is critical for understanding their biological processes and ecological roles. While existing tools support functional enrichment analysis from publicly available annotations of well-established model organisms, few are tailored to the specific needs of the fungal research community. Furthermore, many tools struggle with processing functional annotations of novel species, for which no publicly available functional annotations are yet available.
